Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   N6C89_RS00065 Genome accession   NZ_CP104873
Coordinates   13945..15579 (-) Length   544 a.a.
NCBI ID   WP_011973863.1    Uniprot ID   A6UW59
Organism   Methanococcus aeolicus strain PL15/HP     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8945..20579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6C89_RS00040 (N6C89_00040) - 9454..10698 (+) 1245 WP_011973858.1 ATP-grasp domain-containing protein -
  N6C89_RS00045 (N6C89_00045) tfe 10658..11209 (+) 552 WP_011973859.1 transcription factor E -
  N6C89_RS00050 (N6C89_00050) - 11462..11917 (+) 456 WP_232202543.1 TIGR00295 family protein -
  N6C89_RS00055 (N6C89_00055) epdJ 11965..12852 (-) 888 WP_011973861.1 type II secretion system F family protein Machinery gene
  N6C89_RS00060 (N6C89_00060) epdK 12904..13932 (-) 1029 WP_011973862.1 type II secretion system F family protein Machinery gene
  N6C89_RS00065 (N6C89_00065) epdL 13945..15579 (-) 1635 WP_011973863.1 CpaF family protein Machinery gene
  N6C89_RS00070 (N6C89_00070) - 15616..16620 (-) 1005 WP_011973864.1 transcription initiation factor IIB -
  N6C89_RS00075 (N6C89_00075) - 16779..17078 (-) 300 WP_011973865.1 Gar1/Naf1 family protein -
  N6C89_RS00080 (N6C89_00080) - 17643..18698 (+) 1056 WP_011973866.1 radical SAM protein -
  N6C89_RS00085 (N6C89_00085) - 18834..19325 (+) 492 WP_011973867.1 PUA domain-containing protein -
  N6C89_RS00090 (N6C89_00090) - 19521..20366 (+) 846 WP_011973868.1 hypothetical protein -

Sequence

Protein


Download         Length: 544 a.a.        Molecular weight: 61182.38 Da        Isoelectric Point: 5.8158

>NTDB_id=733051 N6C89_RS00065 WP_011973863.1 13945..15579(-) (epdL) [Methanococcus aeolicus strain PL15/HP]
MGLFDKSKKPTSRTLNKSKVSKVGAPKDTKNKITSLQKNTAQNSIGKTDSTAKYMGDESYGEKEIIDSYEVTVDGAPFDI
VLEKINGVIYYAVPEMDSLDKIWDKFSIEILDNLKNELSSKIFEDIKNLREYLSEFCERYNIILKKEEIESLSKYYYLSL
GKLGLIEIPLHDSNLEELMVNGNSAPTFVAHRKYDMCETHMKLDNNELMRVVEGIAMLANRTIDSRTPMLDAFLPDGSRV
NATTPDVTLNGVTLTIRKFSEDPLTIVDLIKFGTFNIELAAFLWQAVEGYFGSKPANTLIAGGTGSGKTTTLNVVSLFSM
YTDRIITVEDTPELQIPHKHVVKMITRPARPGIEGYEVTMNDLIKNTLRMRPDRIFVGEVRGPEAQSLLTAMNTGHDGCS
GTLHANSADEAISRLINPPMSVPKIMVGALDFIINQQRIKRNRKTIRRILSIMEIGGEGENITKTELFKYDGMNDEIVKT
GICMWEEEVCRIAGIDRTELIKDRIDREEVLKYMINNNINGIKNVGKIILSYQENPEKVMSKIG

Nucleotide


Download         Length: 1635 bp        

>NTDB_id=733051 N6C89_RS00065 WP_011973863.1 13945..15579(-) (epdL) [Methanococcus aeolicus strain PL15/HP]
ATGGGACTATTTGATAAATCAAAAAAACCAACATCCAGAACATTAAATAAAAGTAAAGTAAGTAAAGTAGGAGCTCCCAA
AGATACTAAAAATAAAATAACTTCCCTGCAAAAAAATACAGCTCAAAATTCAATAGGCAAAACAGATTCAACTGCAAAAT
ATATGGGCGATGAATCTTATGGGGAAAAGGAAATTATTGATAGTTATGAAGTAACTGTTGATGGAGCTCCATTTGATATA
GTTCTTGAAAAAATTAATGGCGTCATATATTATGCCGTGCCCGAAATGGACTCATTAGATAAAATATGGGATAAATTCTC
AATAGAAATATTAGATAATCTAAAAAACGAACTTAGTAGTAAAATTTTCGAAGATATAAAAAATCTAAGGGAATATTTAA
GCGAATTTTGTGAAAGATATAATATAATATTGAAAAAAGAGGAAATTGAATCACTATCCAAATATTATTATTTATCATTG
GGAAAACTTGGATTGATAGAAATACCATTGCATGATAGTAATTTAGAGGAATTAATGGTAAATGGAAATAGTGCCCCTAC
ATTTGTTGCACATAGAAAATATGATATGTGTGAAACCCATATGAAATTAGATAATAATGAATTAATGAGGGTTGTTGAAG
GCATTGCTATGCTGGCAAATAGAACCATTGATTCAAGAACTCCAATGTTAGATGCTTTTTTACCGGATGGTAGTAGGGTA
AATGCTACAACACCAGATGTAACATTAAATGGAGTTACCCTGACAATACGTAAATTCTCAGAAGACCCGTTAACTATTGT
AGATTTAATAAAGTTTGGGACATTTAATATAGAGCTTGCTGCATTTTTATGGCAAGCTGTTGAAGGTTATTTTGGTTCAA
AGCCCGCAAATACGCTGATTGCAGGAGGTACTGGTTCAGGTAAAACTACTACCCTTAATGTCGTTTCACTATTTTCAATG
TATACCGATAGAATTATAACTGTTGAAGATACGCCCGAGTTACAAATTCCACATAAACATGTTGTTAAAATGATAACCCG
ACCTGCAAGACCAGGTATTGAAGGATATGAAGTTACAATGAATGATTTAATTAAAAACACTTTAAGAATGAGGCCCGATA
GAATATTTGTAGGAGAAGTTAGGGGCCCAGAGGCCCAATCATTATTAACTGCAATGAATACAGGGCATGACGGTTGTTCT
GGAACACTTCACGCAAACAGTGCCGATGAGGCCATTTCTAGATTAATTAATCCTCCGATGTCAGTTCCCAAAATTATGGT
TGGAGCATTGGATTTTATTATAAACCAGCAAAGAATTAAAAGAAATAGAAAAACCATTAGAAGGATATTAAGTATAATGG
AAATAGGGGGAGAAGGAGAGAACATAACCAAAACTGAATTGTTTAAATATGACGGTATGAATGACGAGATTGTTAAAACT
GGTATATGTATGTGGGAAGAAGAAGTTTGTAGAATTGCAGGTATTGACAGAACCGAATTAATAAAAGATAGGATAGATAG
GGAAGAAGTATTGAAATATATGATTAATAATAATATTAACGGCATAAAAAATGTTGGAAAAATTATATTGAGTTATCAAG
AAAATCCGGAAAAAGTTATGAGCAAGATTGGATAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(172-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6UW59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanococcus maripaludis strain DSM 2067

69.102

88.051

0.608