Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   N6C89_RS00055 Genome accession   NZ_CP104873
Coordinates   11965..12852 (-) Length   295 a.a.
NCBI ID   WP_011973861.1    Uniprot ID   A6UW57
Organism   Methanococcus aeolicus strain PL15/HP     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6965..17852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6C89_RS00030 (N6C89_00030) - 6989..8215 (+) 1227 WP_011973856.1 ArsR family transcriptional regulator -
  N6C89_RS00035 (N6C89_00035) mptA 8347..9276 (+) 930 WP_011973857.1 GTP cyclohydrolase MptA -
  N6C89_RS00040 (N6C89_00040) - 9454..10698 (+) 1245 WP_011973858.1 ATP-grasp domain-containing protein -
  N6C89_RS00045 (N6C89_00045) tfe 10658..11209 (+) 552 WP_011973859.1 transcription factor E -
  N6C89_RS00050 (N6C89_00050) - 11462..11917 (+) 456 WP_232202543.1 TIGR00295 family protein -
  N6C89_RS00055 (N6C89_00055) epdJ 11965..12852 (-) 888 WP_011973861.1 type II secretion system F family protein Machinery gene
  N6C89_RS00060 (N6C89_00060) epdK 12904..13932 (-) 1029 WP_011973862.1 type II secretion system F family protein Machinery gene
  N6C89_RS00065 (N6C89_00065) epdL 13945..15579 (-) 1635 WP_011973863.1 CpaF family protein Machinery gene
  N6C89_RS00070 (N6C89_00070) - 15616..16620 (-) 1005 WP_011973864.1 transcription initiation factor IIB -
  N6C89_RS00075 (N6C89_00075) - 16779..17078 (-) 300 WP_011973865.1 Gar1/Naf1 family protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32532.70 Da        Isoelectric Point: 8.7176

>NTDB_id=733049 N6C89_RS00055 WP_011973861.1 11965..12852(-) (epdJ) [Methanococcus aeolicus strain PL15/HP]
MDLKQIYSYTISRNIFILRKSGIKTNAKLYIGLTIFGSIIIPLLFNHFMHLNIKTTFILFLVYLGVFLSIPSIIYEGKIE
KFEKNIPKALYVMTLSLDSGRSVTEAIEEVINAGVNGVDKEFMKILYLIIEKKYSFEDAMTTITENSDSMVFRQIGRLII
ENRKQGGELASTLRTLAKTLEDLMNIKQQLLSTTANGLVVGLVILCGVIPATAGLIGGYLTVLSTMSPNMPAPSPEQIAK
CYELIQLGTGIFGLLFSIPLFGLNLSRMIITCAICMTGGIVVFYGISMGSGFLFS

Nucleotide


Download         Length: 888 bp        

>NTDB_id=733049 N6C89_RS00055 WP_011973861.1 11965..12852(-) (epdJ) [Methanococcus aeolicus strain PL15/HP]
ATGGATTTAAAACAAATTTACAGCTACACCATATCCCGTAATATATTTATATTGAGAAAATCAGGGATTAAAACCAATGC
AAAATTATATATTGGATTAACCATTTTTGGTTCGATTATTATCCCACTATTATTTAATCATTTTATGCATTTAAATATTA
AAACTACATTTATATTGTTTTTAGTTTATCTGGGTGTTTTCCTAAGTATTCCTTCCATTATATATGAAGGAAAAATTGAA
AAGTTTGAAAAAAATATACCTAAGGCATTATATGTAATGACGCTATCGCTTGATTCTGGTCGTTCCGTCACAGAAGCTAT
TGAAGAAGTTATAAATGCAGGAGTTAATGGAGTAGACAAAGAATTTATGAAAATATTGTATTTAATTATAGAAAAAAAAT
ATAGTTTTGAAGATGCTATGACCACCATAACAGAAAATTCAGATTCTATGGTATTTAGACAGATTGGTAGGTTAATAATA
GAAAATAGGAAACAAGGCGGAGAGCTCGCTTCAACCCTTAGAACACTTGCAAAAACTCTTGAAGATTTAATGAATATTAA
ACAGCAATTATTAAGTACAACTGCAAATGGTCTTGTTGTTGGTTTAGTTATTTTATGTGGAGTTATTCCTGCCACAGCTG
GTTTAATTGGAGGATATTTAACAGTATTATCTACAATGTCACCAAATATGCCTGCTCCGAGTCCCGAGCAAATAGCAAAA
TGCTACGAATTAATACAGCTAGGAACTGGTATTTTTGGATTATTATTTTCCATTCCATTATTTGGATTAAATTTAAGTAG
AATGATTATTACCTGTGCCATATGTATGACTGGCGGGATTGTTGTGTTTTATGGTATTTCAATGGGTTCGGGATTTTTAT
TTTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(92-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6UW57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

59.044

99.322

0.586