Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | N7D90_RS13915 | Genome accession | NZ_CP104861 |
| Coordinates | 3051357..3052223 (+) | Length | 288 a.a. |
| NCBI ID | WP_261738570.1 | Uniprot ID | - |
| Organism | Pseudomonas fragi strain D12 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3046357..3057223
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N7D90_RS13880 (N7D90_13880) | gspG | 3046938..3047369 (+) | 432 | WP_261738563.1 | type II secretion system major pseudopilin GspG | - |
| N7D90_RS13885 (N7D90_13885) | gspH | 3047371..3047853 (+) | 483 | WP_261738564.1 | type II secretion system minor pseudopilin GspH | - |
| N7D90_RS13890 (N7D90_13890) | gspI | 3047840..3048208 (+) | 369 | WP_261738565.1 | type II secretion system minor pseudopilin GspI | - |
| N7D90_RS13895 (N7D90_13895) | gspJ | 3048205..3048804 (+) | 600 | WP_261738566.1 | type II secretion system minor pseudopilin GspJ | - |
| N7D90_RS13900 (N7D90_13900) | gspK | 3048797..3049675 (+) | 879 | WP_261738567.1 | type II secretion system minor pseudopilin GspK | - |
| N7D90_RS13905 (N7D90_13905) | gspL | 3049683..3050762 (+) | 1080 | WP_261738568.1 | type II secretion system protein GspL | - |
| N7D90_RS13910 (N7D90_13910) | - | 3050765..3051211 (+) | 447 | WP_261738569.1 | type II secretion system protein M | - |
| N7D90_RS13915 (N7D90_13915) | pilD | 3051357..3052223 (+) | 867 | WP_261738570.1 | prepilin peptidase | Machinery gene |
| N7D90_RS13925 (N7D90_13925) | pgsA | 3052471..3053028 (-) | 558 | WP_261738571.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| N7D90_RS13930 (N7D90_13930) | uvrC | 3053061..3054884 (-) | 1824 | WP_261738572.1 | excinuclease ABC subunit UvrC | - |
| N7D90_RS13935 (N7D90_13935) | uvrY | 3054887..3055525 (-) | 639 | WP_261738573.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| N7D90_RS13940 (N7D90_13940) | - | 3055675..3056022 (-) | 348 | WP_261742448.1 | helix-turn-helix domain-containing protein | - |
| N7D90_RS13945 (N7D90_13945) | - | 3056104..3056346 (+) | 243 | WP_261738574.1 | DNA-binding protein | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31568.22 Da Isoelectric Point: 6.3163
>NTDB_id=732816 N7D90_RS13915 WP_261738570.1 3051357..3052223(+) (pilD) [Pseudomonas fragi strain D12]
MALTEVLASFPLVFVIYALVLGLIVGSFINVLVWRLPKMLERDWQAQAHEALNLPAEPAGAPYNLMYPHSACPHCAESIR
PWQNIPLVSYLLLRGRCSGCQKTISLRYPLTELACAVLSGFIAWHFGFGWQAAGVLVLSWGLLAASLIDADHQLLPDELT
LPLLWLGLIVNSFGVFVPLTDAMWGAVAGYLSLWSVFWLFRLLTGQDGLGYGDFKLLALLGAWGGWQILPLTILLAALAG
TLGGLTLLRLRNAQVSTPTPFGPYLAMAGWAALIWGDQITNFYWQFVG
MALTEVLASFPLVFVIYALVLGLIVGSFINVLVWRLPKMLERDWQAQAHEALNLPAEPAGAPYNLMYPHSACPHCAESIR
PWQNIPLVSYLLLRGRCSGCQKTISLRYPLTELACAVLSGFIAWHFGFGWQAAGVLVLSWGLLAASLIDADHQLLPDELT
LPLLWLGLIVNSFGVFVPLTDAMWGAVAGYLSLWSVFWLFRLLTGQDGLGYGDFKLLALLGAWGGWQILPLTILLAALAG
TLGGLTLLRLRNAQVSTPTPFGPYLAMAGWAALIWGDQITNFYWQFVG
Nucleotide
Download Length: 867 bp
>NTDB_id=732816 N7D90_RS13915 WP_261738570.1 3051357..3052223(+) (pilD) [Pseudomonas fragi strain D12]
ATGGCCCTCACTGAAGTCCTTGCCAGTTTCCCTCTGGTTTTCGTCATATACGCACTGGTGCTAGGACTGATCGTAGGCAG
TTTTATCAATGTGCTGGTCTGGCGCCTGCCGAAGATGCTCGAACGCGACTGGCAAGCACAGGCCCATGAAGCGCTCAATC
TGCCCGCTGAACCTGCCGGGGCGCCCTATAACCTGATGTACCCGCACTCCGCCTGCCCCCATTGCGCAGAGTCGATTCGT
CCGTGGCAAAACATCCCTCTGGTGAGCTACCTGCTGCTGCGTGGTCGTTGTTCAGGCTGCCAAAAAACCATCAGCCTTCG
CTACCCGCTGACAGAGCTGGCCTGCGCTGTGCTCTCGGGATTTATCGCCTGGCATTTCGGGTTTGGCTGGCAGGCCGCCG
GAGTATTGGTCTTGAGTTGGGGTTTGCTGGCAGCGAGCCTGATCGATGCCGACCACCAATTATTGCCTGATGAGCTGACA
CTGCCGCTGCTGTGGCTCGGCTTGATCGTGAACAGCTTCGGAGTATTTGTCCCGCTGACGGACGCGATGTGGGGCGCGGT
GGCTGGCTACCTGAGTCTATGGTCAGTGTTCTGGCTGTTTCGACTGCTCACCGGCCAGGACGGCTTGGGCTATGGCGACT
TCAAATTGCTGGCCCTGCTGGGGGCCTGGGGCGGCTGGCAGATATTGCCGCTGACCATCCTGCTGGCGGCCCTGGCTGGC
ACGTTGGGCGGCCTGACGTTGCTGCGTTTGCGCAACGCTCAAGTATCGACACCGACCCCCTTTGGTCCCTATCTGGCCAT
GGCCGGCTGGGCTGCATTGATATGGGGTGATCAAATAACCAACTTCTATTGGCAATTCGTCGGTTAG
ATGGCCCTCACTGAAGTCCTTGCCAGTTTCCCTCTGGTTTTCGTCATATACGCACTGGTGCTAGGACTGATCGTAGGCAG
TTTTATCAATGTGCTGGTCTGGCGCCTGCCGAAGATGCTCGAACGCGACTGGCAAGCACAGGCCCATGAAGCGCTCAATC
TGCCCGCTGAACCTGCCGGGGCGCCCTATAACCTGATGTACCCGCACTCCGCCTGCCCCCATTGCGCAGAGTCGATTCGT
CCGTGGCAAAACATCCCTCTGGTGAGCTACCTGCTGCTGCGTGGTCGTTGTTCAGGCTGCCAAAAAACCATCAGCCTTCG
CTACCCGCTGACAGAGCTGGCCTGCGCTGTGCTCTCGGGATTTATCGCCTGGCATTTCGGGTTTGGCTGGCAGGCCGCCG
GAGTATTGGTCTTGAGTTGGGGTTTGCTGGCAGCGAGCCTGATCGATGCCGACCACCAATTATTGCCTGATGAGCTGACA
CTGCCGCTGCTGTGGCTCGGCTTGATCGTGAACAGCTTCGGAGTATTTGTCCCGCTGACGGACGCGATGTGGGGCGCGGT
GGCTGGCTACCTGAGTCTATGGTCAGTGTTCTGGCTGTTTCGACTGCTCACCGGCCAGGACGGCTTGGGCTATGGCGACT
TCAAATTGCTGGCCCTGCTGGGGGCCTGGGGCGGCTGGCAGATATTGCCGCTGACCATCCTGCTGGCGGCCCTGGCTGGC
ACGTTGGGCGGCCTGACGTTGCTGCGTTTGCGCAACGCTCAAGTATCGACACCGACCCCCTTTGGTCCCTATCTGGCCAT
GGCCGGCTGGGCTGCATTGATATGGGGTGATCAAATAACCAACTTCTATTGGCAATTCGTCGGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
51.064 |
97.917 |
0.5 |
| pilD | Vibrio cholerae strain A1552 |
51.064 |
97.917 |
0.5 |
| pilD | Acinetobacter nosocomialis M2 |
47.985 |
94.792 |
0.455 |
| pilD | Acinetobacter baumannii D1279779 |
47.985 |
94.792 |
0.455 |
| pilD | Neisseria gonorrhoeae MS11 |
49.43 |
91.319 |
0.451 |