Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N7D90_RS06185 Genome accession   NZ_CP104861
Coordinates   1320286..1320921 (+) Length   211 a.a.
NCBI ID   WP_261742390.1    Uniprot ID   -
Organism   Pseudomonas fragi strain D12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1315286..1325921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7D90_RS06165 (N7D90_06165) - 1315523..1316455 (+) 933 WP_261741335.1 ABC transporter ATP-binding protein -
  N7D90_RS06170 (N7D90_06170) - 1316452..1317231 (+) 780 WP_261741336.1 ABC transporter permease -
  N7D90_RS06175 (N7D90_06175) - 1317372..1317887 (-) 516 WP_261741337.1 DUF2062 domain-containing protein -
  N7D90_RS06180 (N7D90_06180) comA 1318033..1320237 (+) 2205 WP_261741338.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N7D90_RS06185 (N7D90_06185) exbB 1320286..1320921 (+) 636 WP_261742390.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N7D90_RS06190 (N7D90_06190) - 1320918..1321346 (+) 429 WP_261741339.1 ExbD/TolR family protein -
  N7D90_RS06195 (N7D90_06195) lpxK 1321346..1322350 (+) 1005 WP_261741340.1 tetraacyldisaccharide 4'-kinase -
  N7D90_RS06200 (N7D90_06200) - 1322381..1322566 (+) 186 WP_019827923.1 Trm112 family protein -
  N7D90_RS06205 (N7D90_06205) kdsB 1322563..1323327 (+) 765 WP_261741341.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N7D90_RS06210 (N7D90_06210) murB 1323324..1324343 (+) 1020 WP_261741342.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.19 Da        Isoelectric Point: 6.8768

>NTDB_id=732815 N7D90_RS06185 WP_261742390.1 1320286..1320921(+) (exbB) [Pseudomonas fragi strain D12]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKLLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDVVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=732815 N7D90_RS06185 WP_261742390.1 1320286..1320921(+) (exbB) [Pseudomonas fragi strain D12]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCGGAGCATCTGCTCGGCCAGGTCTGGGTCTGGATCAAAGACA
AACAGATGGACAAGGAAAAACTCAAATTACTGCGCGCCGACTCGCCTTTGGGTGAGATTCTGGCCGCGGGCCTGGCCAAC
TCAAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCCGCCCGGGTGATTCACGAGCTTGAGCGCTACCT
CAATGCGCTGGGTACGATTGCTGCAATGGCGCCGTTGCTGGGCCTGCTGGGCACCGTGTTGGGCATGATCGATATTTTCA
GCTCCTTCATGGGCTCGGGCATGACCACCAACGCCGCCGTGCTGGCGGGGGGTATTTCCAAGGCGCTGATTACTACTGCC
GCTGGTCTGATGGTGGGCATCCCCGCAGTCTTCTTCCATCGCTTCCTGCAACGTCGGGTTGACGAGCTGGTGGTCGGCAT
GGAGCAAGAAGCGATTAAGCTGGTCGAAGTGGTACAGGGCGACCGCGAAGTCGATGTGGTCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853