Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N7D90_RS06180 Genome accession   NZ_CP104861
Coordinates   1318033..1320237 (+) Length   734 a.a.
NCBI ID   WP_261741338.1    Uniprot ID   -
Organism   Pseudomonas fragi strain D12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1313033..1325237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7D90_RS06160 (N7D90_06160) - 1314763..1315389 (+) 627 WP_261741334.1 glutathione S-transferase family protein -
  N7D90_RS06165 (N7D90_06165) - 1315523..1316455 (+) 933 WP_261741335.1 ABC transporter ATP-binding protein -
  N7D90_RS06170 (N7D90_06170) - 1316452..1317231 (+) 780 WP_261741336.1 ABC transporter permease -
  N7D90_RS06175 (N7D90_06175) - 1317372..1317887 (-) 516 WP_261741337.1 DUF2062 domain-containing protein -
  N7D90_RS06180 (N7D90_06180) comA 1318033..1320237 (+) 2205 WP_261741338.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N7D90_RS06185 (N7D90_06185) exbB 1320286..1320921 (+) 636 WP_261742390.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N7D90_RS06190 (N7D90_06190) - 1320918..1321346 (+) 429 WP_261741339.1 ExbD/TolR family protein -
  N7D90_RS06195 (N7D90_06195) lpxK 1321346..1322350 (+) 1005 WP_261741340.1 tetraacyldisaccharide 4'-kinase -
  N7D90_RS06200 (N7D90_06200) - 1322381..1322566 (+) 186 WP_019827923.1 Trm112 family protein -
  N7D90_RS06205 (N7D90_06205) kdsB 1322563..1323327 (+) 765 WP_261741341.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N7D90_RS06210 (N7D90_06210) murB 1323324..1324343 (+) 1020 WP_261741342.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 79589.57 Da        Isoelectric Point: 10.5171

>NTDB_id=732814 N7D90_RS06180 WP_261741338.1 1318033..1320237(+) (comA) [Pseudomonas fragi strain D12]
MFALASGLIALRFLPALPSAGWLLLMLLAGLLLLVSRAWQVGLFVLGLSWACVQGQRALDDRLADSLDGRTLWIEGRVVG
LPQHTGGSVRFELQGAMSRHGTLPTTIRLSWYGGPPVNSGERWRLAVKLKKPRGLINPQGFDYQAWLLAQRIGATGVVKD
GRLLMAASHAWRDGLRQRLLQIDANGRTPWLAALVMGDSSGLSRDDWALLQATGTVHLLVISGQHIGLFAGLIYGLIALM
ARYGVWPRVLPWLPWACGLAFAGATGYGALAGFEVPVQRACVMLGLVLIWRLRFRHLGVWLPFLLALNAVLLVEPLASLR
PGLWLSFAAVAVLIFTFSARLGAWSWRAAWLRPQGLIALGLFPLLWILGLPISLTGPLANLMAVPWISLVVLPTALLGTL
LLPVPVLGENLLWLSGGLLDVLIQGLHLLGGVFNPWSPAVAPIYIWLLTALGVLLLLLPAGVALRPLGWPLVLLAVFAPR
EQIPHGQVEVLQLDVGQGLALVLRTRNHTLLYDAGPKVRNFDQGERVVVPALRSLGVGALDVMLLSHADADHAGGALAVQ
RAFSVGRVLGGDVPGLPEQLQAQPCVSGEGWEWDGVKFSLWQWADATDSNQKSCVLQVLAGTERLLLTGDIDARAEHALL
KSSLAVPTRWLQSPHHGSKTSSSMAFLKALAPQAVLISRGHANNFGHPHPHVMARYQALGLQVWDSAEQGAVWFRLGANG
KAESMRDQRRFWRD

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=732814 N7D90_RS06180 WP_261741338.1 1318033..1320237(+) (comA) [Pseudomonas fragi strain D12]
ATGTTTGCGCTCGCATCGGGCCTGATTGCGCTGCGGTTTTTACCCGCGTTGCCCTCAGCGGGCTGGTTGCTGCTGATGCT
GTTGGCGGGGCTATTGCTCTTGGTCTCGCGCGCCTGGCAGGTGGGGCTTTTTGTGCTTGGGTTGAGCTGGGCCTGTGTTC
AGGGGCAACGGGCGCTGGATGACCGCCTGGCGGATTCACTCGATGGTCGCACCCTCTGGATTGAAGGGCGAGTGGTCGGG
TTGCCGCAACACACTGGCGGCTCAGTACGTTTTGAATTGCAGGGCGCCATGTCGCGCCACGGTACATTGCCCACGACCAT
CAGGTTGAGCTGGTATGGCGGGCCGCCCGTCAACAGTGGCGAACGTTGGCGGCTGGCGGTCAAGCTCAAGAAGCCCAGGG
GTTTGATTAACCCCCAGGGTTTTGATTATCAGGCCTGGTTGCTGGCGCAACGGATTGGTGCGACAGGTGTGGTCAAGGAT
GGCCGGTTACTGATGGCCGCCAGTCATGCCTGGCGTGACGGTTTGCGCCAGCGCCTGTTGCAGATCGATGCCAATGGTCG
AACGCCTTGGCTGGCGGCACTGGTCATGGGCGACAGTTCGGGGCTGAGCCGTGACGACTGGGCGCTGCTGCAAGCGACCG
GCACGGTGCATTTACTGGTGATCTCGGGGCAGCATATCGGGCTGTTTGCCGGGTTGATCTATGGGTTGATAGCCCTGATG
GCGCGTTATGGTGTGTGGCCACGGGTTTTGCCGTGGCTGCCCTGGGCCTGCGGTCTGGCGTTTGCGGGGGCTACTGGGTA
TGGCGCACTGGCGGGCTTTGAAGTGCCGGTGCAGCGCGCCTGCGTGATGCTGGGGCTGGTGCTGATATGGCGTTTGCGGT
TTCGTCATCTGGGCGTGTGGCTGCCTTTTCTGTTGGCCCTCAATGCGGTGTTGCTCGTGGAGCCGCTGGCAAGTTTGAGG
CCGGGCTTGTGGTTGTCGTTTGCAGCCGTTGCAGTGCTGATTTTTACCTTCAGTGCGCGTTTGGGGGCATGGAGCTGGCG
GGCTGCATGGTTGCGACCGCAGGGGCTGATTGCTCTGGGCTTGTTTCCGCTGCTGTGGATCCTCGGTTTGCCCATCAGCC
TGACCGGGCCGCTGGCTAATTTAATGGCCGTACCCTGGATCAGTCTGGTGGTGCTACCGACAGCGCTGCTGGGTACGTTG
CTACTACCTGTGCCCGTGCTGGGTGAAAATCTGCTGTGGCTGTCGGGCGGCTTGCTCGACGTATTGATTCAAGGGCTGCA
CCTGCTGGGCGGTGTTTTTAATCCCTGGTCGCCTGCAGTCGCGCCGATTTACATTTGGCTGCTGACAGCCCTTGGAGTCC
TGCTCCTGCTGCTGCCTGCCGGGGTAGCACTCCGGCCGTTGGGTTGGCCGTTGGTCCTGTTGGCGGTATTTGCGCCCCGT
GAGCAGATCCCCCATGGCCAGGTCGAGGTACTGCAACTGGATGTCGGGCAGGGGCTGGCGCTGGTCTTGCGCACCCGTAA
TCACACGCTGTTATATGACGCAGGCCCGAAGGTCCGGAATTTCGATCAGGGCGAGCGGGTCGTGGTCCCTGCGTTGCGTT
CATTGGGGGTTGGGGCATTGGATGTGATGCTGCTCAGCCACGCCGACGCGGATCATGCGGGCGGTGCGTTGGCGGTGCAG
CGAGCATTCAGTGTGGGCCGGGTGCTCGGGGGTGATGTGCCAGGGCTGCCAGAGCAATTGCAGGCGCAGCCGTGCGTCAG
TGGGGAAGGCTGGGAGTGGGATGGCGTCAAGTTTTCGCTCTGGCAGTGGGCTGATGCGACTGACAGCAACCAGAAATCCT
GTGTGCTGCAGGTGCTGGCAGGTACTGAGCGGCTGCTGCTGACGGGCGATATCGACGCCCGCGCCGAGCACGCCCTGCTG
AAAAGCTCGCTGGCTGTTCCTACCCGCTGGTTGCAATCGCCACACCACGGCAGCAAGACCTCGTCGTCGATGGCTTTTCT
CAAGGCGCTGGCGCCGCAAGCAGTGCTGATTTCCCGGGGGCATGCTAATAACTTTGGTCACCCCCATCCGCACGTGATGG
CCCGTTACCAGGCGCTGGGGTTGCAGGTGTGGGACAGCGCCGAGCAAGGTGCGGTGTGGTTTCGTTTGGGAGCGAACGGC
AAGGCCGAGAGCATGCGCGACCAGCGCCGGTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-681)

Competence protein (Competence)

(194-457)

Domain of unknown function (DUF4131) (DUF4131)

(16-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.527

97.956

0.583
  comA Ralstonia pseudosolanacearum GMI1000

34.585

100

0.364