Detailed information NTG0732809

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N7D90_RS03695
• Genome accession: NZ_CP104861
• Coordinates: 765592..766452 (-)
• Length: 286 a.a.
• NCBI ID: WP_315968150.1
• Uniprot ID: -
• Organism: Pseudomonas fragi strain D12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 760592..771452

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7D90_RS03665 (N7D90_03665)	-	761609..762910 (-)	1302	WP_261740922.1	NAD(P)/FAD-dependent oxidoreductase	-
N7D90_RS03670 (N7D90_03670)	-	762976..763149 (-)	174	WP_261740923.1	DUF3094 domain-containing protein	-
N7D90_RS03675 (N7D90_03675)	-	763240..763869 (-)	630	WP_261740924.1	DUF1780 domain-containing protein	-
N7D90_RS03680 (N7D90_03680)	-	763979..764668 (+)	690	WP_261740925.1	energy-coupling factor ABC transporter permease	-
N7D90_RS03685 (N7D90_03685)	yacG	764767..764970 (-)	204	WP_261740926.1	DNA gyrase inhibitor YacG	-
N7D90_RS03690 (N7D90_03690)	coaE	764967..765590 (-)	624	WP_261740927.1	dephospho-CoA kinase	-
N7D90_RS03695 (N7D90_03695)	pilD	765592..766452 (-)	861	WP_315968150.1	prepilin peptidase	Machinery gene
N7D90_RS03700 (N7D90_03700)	pilC	766455..767672 (-)	1218	WP_261740928.1	type II secretion system F family protein	Machinery gene
N7D90_RS03705 (N7D90_03705)	-	767886..768293 (+)	408	WP_261740929.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
N7D90_RS03715 (N7D90_03715)	-	768531..770021 (+)	1491	WP_261740930.1	DNA-3-methyladenine glycosylase 2	-
N7D90_RS03720 (N7D90_03720)	-	770024..770521 (+)	498	WP_261740931.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31624.70 Da
• Isoelectric Point: 8.5921

>NTDB_id=732809 N7D90_RS03695 WP_315968150.1 765592..766452(-) (pilD) [Pseudomonas fragi strain D12]
MIDFFNFHPDAFIACALLLGLLAGSFINVLAWRLPKMLEQDWQSQARELLDLPEPAKRPVYNLRHPRSHCPACTHPLRLR
DNIPVLSYLFLRGKCAHCQTAISLRYPFTELACAVLSAVVAWHFGFGAQAGWMLLLTWGLLAICLIDAKHQIVPDMLVFP
LLWLGLLLNSFDLFTSLPQAVWGAALGYASLWSVFWLFKLITGKEGMGYGDFKLLAMLGAWGGVAVLPLTILFSSLLGAL
VGLGLLALRRAKTSTAIPFAPYLAIAGWIALLWGGQITGFYWPISV

Nucleotide

• Length: 861 bp

>NTDB_id=732809 N7D90_RS03695 WP_315968150.1 765592..766452(-) (pilD) [Pseudomonas fragi strain D12]
ATGATTGATTTCTTCAATTTTCATCCTGATGCATTCATTGCCTGTGCCCTGCTATTGGGCTTGTTGGCGGGCAGCTTTAT
CAATGTCCTGGCGTGGCGTTTGCCGAAAATGCTCGAACAGGACTGGCAGTCCCAGGCCCGCGAGTTGCTGGACCTACCCG
AGCCCGCCAAGCGCCCTGTGTATAACTTGAGACACCCTCGCTCCCACTGCCCCGCGTGCACGCATCCATTGCGCCTGCGG
GACAACATTCCAGTGCTGAGCTATCTGTTTTTACGGGGCAAGTGCGCGCACTGCCAAACCGCTATCAGCCTGCGCTACCC
CTTCACCGAACTGGCCTGCGCCGTATTGTCGGCCGTTGTAGCCTGGCATTTCGGCTTTGGTGCGCAAGCGGGCTGGATGC
TCCTGCTGACCTGGGGGCTTCTGGCCATTTGCCTGATTGATGCCAAACATCAAATCGTGCCCGACATGCTGGTGTTTCCC
CTGCTCTGGCTGGGGTTGTTGCTCAACAGTTTCGATCTTTTCACCAGCCTGCCCCAAGCCGTATGGGGCGCGGCATTAGG
CTATGCAAGCCTGTGGTCGGTGTTCTGGCTATTCAAACTGATCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCAAGT
TACTGGCCATGCTCGGAGCTTGGGGCGGGGTTGCAGTTCTGCCATTGACCATCCTGTTTTCTTCGCTGCTGGGTGCGCTG
GTGGGGTTGGGCCTTTTGGCTTTGCGCCGCGCCAAAACGTCCACCGCCATTCCCTTTGCGCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCCGATTTCGGTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	49.645	98.601	0.49
pilD	Acinetobacter nosocomialis M2	48.936	98.601	0.483
pilD	Vibrio cholerae strain A1552	48.239	99.301	0.479
pilD	Vibrio campbellii strain DS40M4	46.316	99.65	0.462
pilD	Neisseria gonorrhoeae MS11	45.185	94.406	0.427