Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   P5708_RS00155 Genome accession   NZ_CP120563
Coordinates   28553..29143 (+) Length   196 a.a.
NCBI ID   WP_059327795.1    Uniprot ID   -
Organism   Escherichia coli strain H22     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 23553..34143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5708_RS00120 (P5708_00120) yidG 23845..24207 (+) 363 WP_001113432.1 DUF202 domain-containing protein -
  P5708_RS00125 (P5708_00125) yidF 24204..24701 (+) 498 WP_000148045.1 radical SAM protein -
  P5708_RS00130 (P5708_00130) emrD 24709..25893 (-) 1185 WP_001304999.1 multidrug efflux MFS transporter EmrD -
  P5708_RS00135 (P5708_00135) ysdE 25975..26049 (+) 75 WP_211180519.1 protein YsdE -
  P5708_RS00140 (P5708_00140) ivbL 26294..26392 (+) 99 WP_089638534.1 ilvB operon leader peptide IvbL -
  P5708_RS00145 (P5708_00145) ilvB 26498..28186 (+) 1689 WP_089638535.1 acetolactate synthase large subunit -
  P5708_RS00150 (P5708_00150) ilvN 28190..28480 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  P5708_RS00155 (P5708_00155) letA 28553..29143 (+) 591 WP_059327795.1 transcriptional regulator UhpA Regulator
  P5708_RS00160 (P5708_00160) uhpB 29143..30645 (+) 1503 WP_001332272.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  P5708_RS00165 (P5708_00165) uhpC 30655..31974 (+) 1320 WP_001298006.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  P5708_RS00170 (P5708_00170) uhpT 32112..33503 (+) 1392 WP_000879199.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20919.33 Da        Isoelectric Point: 5.9982

>NTDB_id=732366 P5708_RS00155 WP_059327795.1 28553..29143(+) (letA) [Escherichia coli strain H22]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARSFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=732366 P5708_RS00155 WP_059327795.1 28553..29143(+) (letA) [Escherichia coli strain H22]
ATGATCACCGTTGCCCTTATAGACGATCACCTTATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTTCTAAGCCAGCTGCCGAAAGGCATGGCGACAATTATGCTCTCCGTT
CACGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCAGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACTGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGCGAACGCCAGGTGGCAGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCGCCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGTTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38

100

0.388
  letA Legionella pneumophila strain ERS1305867

38

100

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

32.735

100

0.372