Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   N7E56_RS00775 Genome accession   NZ_CP104786
Coordinates   147463..148281 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Ab-3556     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142463..153281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E56_RS00740 - 143046..143175 (-) 130 Protein_129 hypothetical protein -
  N7E56_RS00745 rpoZ 143214..143492 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N7E56_RS00750 gmk 143565..144194 (-) 630 WP_000015937.1 guanylate kinase -
  N7E56_RS00755 ispH 144317..145267 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N7E56_RS00760 fimU 145437..145910 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  N7E56_RS00765 pilV 145904..146464 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  N7E56_RS00770 pilW 146465..147466 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  N7E56_RS00775 pilX 147463..148281 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N7E56_RS00780 pilY1 148293..152147 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  N7E56_RS00785 pilY2 152160..152642 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  N7E56_RS00790 pilE 152639..153064 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=732309 N7E56_RS00775 WP_000149374.1 147463..148281(+) (pilX) [Acinetobacter baumannii strain Ab-3556]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=732309 N7E56_RS00775 WP_000149374.1 147463..148281(+) (pilX) [Acinetobacter baumannii strain Ab-3556]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993