Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   P5709_RS10430 Genome accession   NZ_CP120557
Coordinates   2096521..2097258 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain B771     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2091521..2102258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5709_RS10415 (P5709_10415) clpC 2091975..2094548 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  P5709_RS10420 (P5709_10420) yfiH 2094678..2095409 (-) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  P5709_RS10425 (P5709_10425) rluD 2095406..2096386 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P5709_RS10430 (P5709_10430) comL 2096521..2097258 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  P5709_RS10435 (P5709_10435) raiA 2097529..2097870 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  P5709_RS10440 (P5709_10440) pheL 2097974..2098021 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  P5709_RS10445 (P5709_10445) pheA 2098119..2099279 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  P5709_RS10450 (P5709_10450) tyrA 2099322..2100443 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  P5709_RS10455 (P5709_10455) aroF 2100454..2101524 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  P5709_RS10460 (P5709_10460) yfiL 2101734..2102099 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=732306 P5709_RS10430 WP_000197686.1 2096521..2097258(+) (comL) [Escherichia coli strain B771]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=732306 P5709_RS10430 WP_000197686.1 2096521..2097258(+) (comL) [Escherichia coli strain B771]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376