Detailed information NTG0732310

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P5709_RS10975
• Genome accession: NZ_CP120557
• Coordinates: 2196735..2197727 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain B771
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2191735..2202727

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P5709_RS10955 (P5709_10955)	otnK	2192510..2193772 (+)	1263	WP_000590386.1	3-oxo-tetronate kinase	-
P5709_RS10960 (P5709_10960)	ygbL	2193769..2194407 (+)	639	WP_001278994.1	aldolase	-
P5709_RS10965 (P5709_10965)	ygbM	2194412..2195188 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
P5709_RS10970 (P5709_10970)	ygbN	2195277..2196641 (+)	1365	WP_000104459.1	GntP family transporter	-
P5709_RS10975 (P5709_10975)	rpoS	2196735..2197727 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
P5709_RS10980 (P5709_10980)	nlpD	2197790..2198884 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
P5709_RS10985 (P5709_10985)	pcm	2199069..2199695 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
P5709_RS10990 (P5709_10990)	surE	2199689..2200450 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
P5709_RS10995 (P5709_10995)	truD	2200431..2201480 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
P5709_RS11000 (P5709_11000)	ispF	2201477..2201956 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P5709_RS11005 (P5709_11005)	ispD	2201956..2202666 (-)	711	WP_029490102.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=732310 P5709_RS10975 WP_000081550.1 2196735..2197727(-) (rpoS) [Escherichia coli strain B771]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=732310 P5709_RS10975 WP_000081550.1 2196735..2197727(-) (rpoS) [Escherichia coli strain B771]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715