Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   N5P13_RS15165 Genome accession   NZ_CP104736
Coordinates   3228641..3229609 (-) Length   322 a.a.
NCBI ID   WP_004923834.1    Uniprot ID   Q9RBI7
Organism   Acinetobacter baylyi strain JAT2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3223641..3234609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS15160 (N5P13_15160) pilX 3227976..3228644 (-) 669 WP_004923837.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N5P13_RS15165 (N5P13_15165) comB 3228641..3229609 (-) 969 WP_004923834.1 PilW family protein Machinery gene
  N5P13_RS15170 (N5P13_15170) pilV 3229610..3230146 (-) 537 WP_004923832.1 type IV pilus modification protein PilV Machinery gene
  N5P13_RS15175 (N5P13_15175) - 3230143..3230589 (-) 447 WP_004923829.1 GspH/FimT family pseudopilin -
  N5P13_RS15180 (N5P13_15180) ispH 3230716..3231666 (-) 951 WP_004923824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N5P13_RS15185 (N5P13_15185) gmk 3231801..3232424 (+) 624 WP_004923822.1 guanylate kinase -
  N5P13_RS15190 (N5P13_15190) rpoZ 3232493..3232774 (+) 282 WP_004923811.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35168.79 Da        Isoelectric Point: 8.7450

>NTDB_id=731753 N5P13_RS15165 WP_004923834.1 3228641..3229609(-) (comB) [Acinetobacter baylyi strain JAT2091]
MKISRHSGFTLVELMVAITLGLLVTAAAIQLYITGITSYNVQKAMSSIQDSASFGVNYILDDVRRANLSAPSAYMNDQQP
NSGLILTSSNVSELKDNKPLLTLNDAYLTKSAVGDGNVSQKSDQLTIRYQAVEPGYDCTGKTLPANTYVVQRYFIGSDKA
LRCVSDQYQQTGNTITGMDNKTKTTLDLSGNGQIIIPNVDYMRVQLGYVKGALNNPTAMSYVSIGDYLDTNKTSAVKKNI
NGIQQSIKPNINVIQIGLLVQSNETAGNDSIVRNRNKQAFDVLGQSVTLNEKNQDTRLRQVVTQTISLRNAMGWVEEGYV
TP

Nucleotide


Download         Length: 969 bp        

>NTDB_id=731753 N5P13_RS15165 WP_004923834.1 3228641..3229609(-) (comB) [Acinetobacter baylyi strain JAT2091]
ATGAAAATCTCTCGCCATTCAGGATTTACGCTAGTTGAACTCATGGTGGCCATTACATTGGGTTTGCTTGTTACAGCCGC
TGCAATTCAGCTCTATATCACAGGGATCACCAGTTACAATGTGCAAAAAGCGATGTCTAGCATTCAGGACAGTGCAAGCT
TTGGAGTCAATTATATTTTAGATGATGTACGTAGAGCCAATTTAAGTGCACCGTCTGCATATATGAATGATCAACAGCCC
AATTCAGGATTAATCCTGACGAGCAGTAATGTAAGTGAATTAAAAGACAATAAACCCTTACTCACCTTAAATGATGCTTA
TCTTACTAAATCTGCTGTAGGTGATGGAAACGTGTCACAGAAAAGTGATCAATTAACTATTCGCTATCAGGCAGTTGAGC
CGGGCTATGATTGTACAGGTAAGACATTGCCTGCGAATACCTATGTAGTTCAACGGTATTTCATAGGAAGTGATAAAGCC
TTGCGATGTGTTTCAGATCAGTACCAACAGACTGGAAATACTATTACGGGAATGGATAATAAAACAAAAACGACATTGGA
TCTTTCGGGAAATGGTCAGATTATTATTCCAAATGTTGATTATATGCGCGTTCAACTTGGATATGTTAAAGGTGCATTGA
ACAATCCAACTGCCATGAGTTATGTCTCAATTGGTGATTATTTGGATACCAATAAAACATCAGCAGTCAAAAAAAATATT
AATGGAATTCAGCAATCTATTAAGCCAAATATTAATGTGATTCAGATTGGATTATTGGTGCAATCCAATGAAACTGCTGG
AAATGACAGCATTGTTCGGAATCGTAATAAACAGGCGTTCGATGTCTTGGGGCAATCTGTCACACTCAATGAAAAAAATC
AGGATACCCGATTGCGCCAAGTAGTTACGCAAACTATTTCCTTAAGAAATGCGATGGGATGGGTTGAAGAGGGGTATGTA
ACGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Type IV Pilus-assembly protein W (PilW)

(153-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RBI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Acinetobacter baylyi ADP1

100

100

1