Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   N5P13_RS15170 Genome accession   NZ_CP104736
Coordinates   3229610..3230146 (-) Length   178 a.a.
NCBI ID   WP_004923832.1    Uniprot ID   -
Organism   Acinetobacter baylyi strain JAT2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3224610..3235146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS15160 (N5P13_15160) pilX 3227976..3228644 (-) 669 WP_004923837.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N5P13_RS15165 (N5P13_15165) comB 3228641..3229609 (-) 969 WP_004923834.1 PilW family protein Machinery gene
  N5P13_RS15170 (N5P13_15170) pilV 3229610..3230146 (-) 537 WP_004923832.1 type IV pilus modification protein PilV Machinery gene
  N5P13_RS15175 (N5P13_15175) - 3230143..3230589 (-) 447 WP_004923829.1 GspH/FimT family pseudopilin -
  N5P13_RS15180 (N5P13_15180) ispH 3230716..3231666 (-) 951 WP_004923824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N5P13_RS15185 (N5P13_15185) gmk 3231801..3232424 (+) 624 WP_004923822.1 guanylate kinase -
  N5P13_RS15190 (N5P13_15190) rpoZ 3232493..3232774 (+) 282 WP_004923811.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19136.80 Da        Isoelectric Point: 8.4743

>NTDB_id=731754 N5P13_RS15170 WP_004923832.1 3229610..3230146(-) (pilV) [Acinetobacter baylyi strain JAT2091]
MSKMRAQRGVGMVEVLVALLLLAIGVLGFTALQLRAVSASMEASNQVLALNLARDLTERMRANPQATQCKLYHTEGALAK
DTKAYTKASNCSGSVSTQATAQANSDLLFIYNQANTLGMAVIINTCPNATNAGNNLGRQCVYIAWDKTAQNFTNSDTCYK
SGGSSYERNTTCLFLEAY

Nucleotide


Download         Length: 537 bp        

>NTDB_id=731754 N5P13_RS15170 WP_004923832.1 3229610..3230146(-) (pilV) [Acinetobacter baylyi strain JAT2091]
ATGAGCAAGATGAGAGCACAGCGTGGTGTGGGGATGGTCGAGGTTTTGGTGGCGCTGCTGTTGCTGGCAATAGGTGTACT
TGGATTTACCGCCTTACAATTACGTGCGGTAAGTGCCAGTATGGAGGCGAGTAATCAGGTTCTGGCTTTGAATTTGGCGC
GTGATCTGACTGAACGTATGCGAGCTAATCCTCAAGCTACTCAATGTAAGCTTTATCATACCGAAGGTGCATTGGCTAAA
GATACTAAAGCCTATACCAAAGCATCAAATTGTTCGGGTTCTGTGAGCACTCAAGCCACGGCTCAGGCAAATAGTGATCT
TTTATTTATCTATAATCAGGCTAATACTTTAGGTATGGCGGTAATTATTAACACCTGTCCAAATGCCACAAATGCAGGCA
ATAATTTGGGGCGACAGTGTGTTTATATTGCTTGGGATAAAACTGCACAGAACTTTACCAACTCTGACACCTGTTACAAA
AGTGGTGGAAGTAGTTATGAGCGAAATACAACGTGTTTGTTTCTGGAGGCGTACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

100

100

1
  pilV Acinetobacter baumannii D1279779

41.398

100

0.433