Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   N5P13_RS15160 Genome accession   NZ_CP104736
Coordinates   3227976..3228644 (-) Length   222 a.a.
NCBI ID   WP_004923837.1    Uniprot ID   Q9RBI6
Organism   Acinetobacter baylyi strain JAT2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3222976..3233644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS15150 (N5P13_15150) comE 3223036..3223545 (-) 510 WP_004923843.1 type IV pilin protein Machinery gene
  N5P13_RS15155 (N5P13_15155) comC 3223607..3227959 (-) 4353 WP_004923840.1 PilC/PilY family type IV pilus protein Machinery gene
  N5P13_RS15160 (N5P13_15160) pilX 3227976..3228644 (-) 669 WP_004923837.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N5P13_RS15165 (N5P13_15165) comB 3228641..3229609 (-) 969 WP_004923834.1 PilW family protein Machinery gene
  N5P13_RS15170 (N5P13_15170) pilV 3229610..3230146 (-) 537 WP_004923832.1 type IV pilus modification protein PilV Machinery gene
  N5P13_RS15175 (N5P13_15175) - 3230143..3230589 (-) 447 WP_004923829.1 GspH/FimT family pseudopilin -
  N5P13_RS15180 (N5P13_15180) ispH 3230716..3231666 (-) 951 WP_004923824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N5P13_RS15185 (N5P13_15185) gmk 3231801..3232424 (+) 624 WP_004923822.1 guanylate kinase -
  N5P13_RS15190 (N5P13_15190) rpoZ 3232493..3232774 (+) 282 WP_004923811.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24146.41 Da        Isoelectric Point: 8.4731

>NTDB_id=731752 N5P13_RS15160 WP_004923837.1 3227976..3228644(-) (pilX) [Acinetobacter baylyi strain JAT2091]
MKKQQQGATLIIVLMILLLIMVVGTLAIRQSISSLKMVSNNQIQALLLQNSDAALMYFQNPVNTTTLAAPDGVVNYFRNN
SNNTQELVTCFNKTDPFRLVRMGTVNSSGKVDNQASCKSTDASGGRNQVVTQVYITKVSSTNNQPFADLARGTDITTAKT
ESSVRLRLTSVSVLTGFISSDDLANCLNKSSANAVSCLSEQQALYNSQVAEYRFLSDFEPPQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=731752 N5P13_RS15160 WP_004923837.1 3227976..3228644(-) (pilX) [Acinetobacter baylyi strain JAT2091]
ATGAAAAAACAACAACAAGGTGCGACCCTCATCATCGTATTGATGATTCTCTTACTGATTATGGTGGTGGGTACTTTAGC
GATTCGGCAAAGTATCAGTTCATTAAAAATGGTATCGAATAATCAGATACAGGCATTATTGTTGCAAAACTCAGATGCTG
CATTAATGTATTTTCAAAACCCCGTCAATACTACAACGCTTGCTGCACCAGATGGTGTAGTTAACTATTTTCGTAATAAC
AGCAACAATACGCAGGAACTAGTCACTTGCTTCAACAAGACAGATCCATTTCGTTTGGTCAGAATGGGAACAGTGAATAG
TTCAGGTAAGGTAGACAATCAGGCTTCTTGTAAAAGTACAGATGCGTCAGGTGGTCGTAATCAGGTCGTGACACAGGTTT
ATATTACAAAAGTCTCATCTACAAATAACCAGCCATTTGCAGATCTGGCACGTGGTACGGATATCACAACAGCTAAAACA
GAAAGTAGTGTGCGGTTACGCTTAACCTCTGTATCAGTGCTAACGGGATTTATATCTTCGGACGATTTAGCCAATTGTTT
AAATAAAAGTTCTGCAAATGCGGTGTCCTGCTTAAGTGAGCAGCAAGCTTTATATAATTCGCAAGTTGCAGAATATCGTT
TCTTGTCAGATTTTGAACCACCACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RBI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

100

100

1