Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   N5P13_RS15150 Genome accession   NZ_CP104736
Coordinates   3223036..3223545 (-) Length   169 a.a.
NCBI ID   WP_004923843.1    Uniprot ID   Q9X2M4
Organism   Acinetobacter baylyi strain JAT2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3218036..3228545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS15115 (N5P13_15115) - 3218118..3219149 (+) 1032 WP_004923856.1 lipase secretion chaperone -
  N5P13_RS15120 (N5P13_15120) - 3219281..3220249 (+) 969 WP_004923853.1 esterase/lipase family protein -
  N5P13_RS15125 (N5P13_15125) rplS 3220319..3220690 (-) 372 WP_004923849.1 50S ribosomal protein L19 -
  N5P13_RS15130 (N5P13_15130) trmD 3220832..3221581 (-) 750 WP_004923847.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  N5P13_RS15135 (N5P13_15135) rimM 3221629..3222177 (-) 549 WP_004923846.1 ribosome maturation factor RimM -
  N5P13_RS15140 (N5P13_15140) rpsP 3222197..3222454 (-) 258 WP_004923845.1 30S ribosomal protein S16 -
  N5P13_RS15145 (N5P13_15145) comF 3222602..3223036 (-) 435 WP_004923844.1 type IV pilin protein Machinery gene
  N5P13_RS15150 (N5P13_15150) comE 3223036..3223545 (-) 510 WP_004923843.1 type IV pilin protein Machinery gene
  N5P13_RS15155 (N5P13_15155) comC 3223607..3227959 (-) 4353 WP_004923840.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18882.38 Da        Isoelectric Point: 8.9118

>NTDB_id=731750 N5P13_RS15150 WP_004923843.1 3223036..3223545(-) (comE) [Acinetobacter baylyi strain JAT2091]
MQHHRQGFTLIELMVVVVIIAIFAAIAIPSYQEYIRRSNLAMAQQEMQKLAEQLERYRSRNFSYKGFDATYLYQDKSGQT
LAKFDSTKQIVQLPLDTSNTKYTLAVVDTTTNNPLLTSANAIGQGWAIKAMSADNNNYSLLLTNTGFSCKNKTWANISSS
SCGTGSESW

Nucleotide


Download         Length: 510 bp        

>NTDB_id=731750 N5P13_RS15150 WP_004923843.1 3223036..3223545(-) (comE) [Acinetobacter baylyi strain JAT2091]
ATGCAGCATCACAGACAGGGTTTTACGCTGATTGAATTGATGGTCGTAGTTGTGATTATTGCAATTTTTGCTGCCATTGC
GATTCCTAGCTATCAGGAATATATACGTCGTTCAAATCTAGCAATGGCTCAACAGGAAATGCAAAAACTAGCAGAACAGC
TTGAGCGTTATCGCTCTAGAAATTTTTCCTATAAAGGGTTTGATGCAACGTATTTATATCAAGATAAAAGTGGTCAAACC
CTTGCAAAATTTGATAGTACAAAACAGATTGTACAGCTACCATTAGATACATCAAATACAAAGTATACTTTGGCTGTTGT
AGATACAACAACCAATAATCCGTTACTAACTTCAGCAAATGCTATTGGACAGGGCTGGGCGATTAAGGCAATGAGTGCAG
ATAATAATAATTATTCATTATTGCTCACAAATACAGGATTTAGCTGTAAAAATAAAACATGGGCTAATATTAGTTCAAGC
TCCTGTGGTACAGGCTCGGAGAGTTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-113)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9X2M4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

100

100

1
  pilY2 Acinetobacter baumannii D1279779

41.279

100

0.42