Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N5P13_RS15145 Genome accession   NZ_CP104736
Coordinates   3222602..3223036 (-) Length   144 a.a.
NCBI ID   WP_004923844.1    Uniprot ID   A0A7G2SAW3
Organism   Acinetobacter baylyi strain JAT2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3217602..3228036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS15115 (N5P13_15115) - 3218118..3219149 (+) 1032 WP_004923856.1 lipase secretion chaperone -
  N5P13_RS15120 (N5P13_15120) - 3219281..3220249 (+) 969 WP_004923853.1 esterase/lipase family protein -
  N5P13_RS15125 (N5P13_15125) rplS 3220319..3220690 (-) 372 WP_004923849.1 50S ribosomal protein L19 -
  N5P13_RS15130 (N5P13_15130) trmD 3220832..3221581 (-) 750 WP_004923847.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  N5P13_RS15135 (N5P13_15135) rimM 3221629..3222177 (-) 549 WP_004923846.1 ribosome maturation factor RimM -
  N5P13_RS15140 (N5P13_15140) rpsP 3222197..3222454 (-) 258 WP_004923845.1 30S ribosomal protein S16 -
  N5P13_RS15145 (N5P13_15145) comF 3222602..3223036 (-) 435 WP_004923844.1 type IV pilin protein Machinery gene
  N5P13_RS15150 (N5P13_15150) comE 3223036..3223545 (-) 510 WP_004923843.1 type IV pilin protein Machinery gene
  N5P13_RS15155 (N5P13_15155) comC 3223607..3227959 (-) 4353 WP_004923840.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15586.71 Da        Isoelectric Point: 8.9405

>NTDB_id=731749 N5P13_RS15145 WP_004923844.1 3222602..3223036(-) (comF) [Acinetobacter baylyi strain JAT2091]
MRVRHGFTLIELMIVVAIIGILAAIAYPSYQNYKIRVNRSDVQSELIRVSQQLQSYKMVNHGYANASLAGLGNAASYPVT
GTAFYTLNLAVDSDNQGYVLTATPISSTMQAGNGIICLNQDGQKFWSKAATACSLSSNSTWDGR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=731749 N5P13_RS15145 WP_004923844.1 3222602..3223036(-) (comF) [Acinetobacter baylyi strain JAT2091]
ATGAGAGTAAGACATGGCTTTACATTGATTGAACTCATGATTGTAGTTGCTATTATTGGAATTTTAGCAGCAATTGCTTA
TCCCTCTTATCAAAACTATAAAATTAGAGTGAATCGTAGCGATGTACAGTCTGAGCTGATTCGGGTTTCACAGCAATTGC
AAAGTTATAAAATGGTGAATCATGGTTATGCCAATGCTTCACTTGCTGGACTTGGCAATGCAGCCAGTTATCCTGTAACT
GGCACAGCATTTTACACACTAAATTTGGCGGTAGATTCAGATAATCAGGGATATGTACTCACAGCAACACCTATATCGAG
CACAATGCAAGCTGGTAATGGCATTATCTGTCTGAATCAGGATGGGCAAAAATTTTGGAGCAAAGCCGCAACGGCATGTA
GCCTGAGTAGCAACTCGACTTGGGATGGGCGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2SAW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

100

100

1
  pilE Acinetobacter baumannii D1279779

53.571

97.222

0.521
  pilA Acinetobacter baumannii strain A118

37.063

99.306

0.368