Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   N5P13_RS13985 Genome accession   NZ_CP104736
Coordinates   2993961..2994347 (-) Length   128 a.a.
NCBI ID   WP_004924483.1    Uniprot ID   -
Organism   Acinetobacter baylyi strain JAT2091     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2988961..2999347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS13955 (N5P13_13955) - 2989059..2989328 (-) 270 WP_004924499.1 HPr family phosphocarrier protein -
  N5P13_RS13960 (N5P13_13960) rapZ 2989325..2990176 (-) 852 WP_004924498.1 RNase adapter RapZ -
  N5P13_RS13965 (N5P13_13965) panC 2990198..2991043 (-) 846 WP_004924494.1 pantoate--beta-alanine ligase -
  N5P13_RS13970 (N5P13_13970) panB 2991047..2991856 (-) 810 WP_004924492.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  N5P13_RS13975 (N5P13_13975) folK 2991894..2992382 (-) 489 WP_004924489.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  N5P13_RS13980 (N5P13_13980) pcnB 2992379..2993836 (-) 1458 WP_004924487.1 polynucleotide adenylyltransferase PcnB -
  N5P13_RS13985 (N5P13_13985) comEA 2993961..2994347 (-) 387 WP_004924483.1 ComEA family DNA-binding protein Machinery gene
  N5P13_RS13990 (N5P13_13990) mazG 2994351..2995118 (-) 768 WP_004924480.1 nucleoside triphosphate pyrophosphohydrolase -
  N5P13_RS13995 (N5P13_13995) - 2995232..2996014 (+) 783 WP_004924478.1 SDR family oxidoreductase -
  N5P13_RS14000 (N5P13_14000) - 2996061..2998367 (-) 2307 WP_004924472.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14530.56 Da        Isoelectric Point: 10.4737

>NTDB_id=731747 N5P13_RS13985 WP_004924483.1 2993961..2994347(-) (comEA) [Acinetobacter baylyi strain JAT2091]
MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQQSGTGVKVNINSATAKELQQ
LHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRLAI

Nucleotide


Download         Length: 387 bp        

>NTDB_id=731747 N5P13_RS13985 WP_004924483.1 2993961..2994347(-) (comEA) [Acinetobacter baylyi strain JAT2091]
ATGTCAATACGTCATTTTTTTACATTTTTTTGGGCGACATTGCTTACACTTTTTTCTATGCAAATTGTTTTTGCACAAGG
GTTTGATCAACAATATGATGCTTGGAAAACACAGCAAAAAGCACATGATACCCGTTTAAACTCATCTGCTAGTCATCATT
CCCTGTCTAAACCGACACAGCAATCTGGCACTGGGGTGAAAGTCAATATTAACTCCGCAACGGCCAAAGAATTACAGCAG
TTGCATGGGGTGGGAGAGAAAAAAGCACTCGCCATCGTTGAATATCGTCAGCAGTATGGCAAGTTTGCGTCTGTAGATGA
TCTACAGAAAGTAAAAGGAATTGGCCCTAAATTTATAGAAAAGAACCGAGACCGTTTAGCCATTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(65-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

100

100

1
  comEA Acinetobacter baumannii strain A118

43.511

100

0.445
  comEA Acinetobacter baumannii D1279779

43.511

100

0.445