Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N5P13_RS01210 Genome accession   NZ_CP104736
Coordinates   257636..259051 (-) Length   471 a.a.
NCBI ID   WP_004920725.1    Uniprot ID   Q6FFD3
Organism   Acinetobacter baylyi strain JAT2091     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 252636..264051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS01195 (N5P13_01195) lptG 253703..254773 (+) 1071 WP_004920734.1 LPS export ABC transporter permease LptG -
  N5P13_RS01200 (N5P13_01200) gpmI 254895..256442 (+) 1548 WP_004920731.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  N5P13_RS01205 (N5P13_01205) - 256453..257634 (+) 1182 WP_004920728.1 S41 family peptidase -
  N5P13_RS01210 (N5P13_01210) pilR 257636..259051 (-) 1416 WP_004920725.1 sigma-54-dependent transcriptional regulator Regulator
  N5P13_RS01215 (N5P13_01215) pilS 259069..260646 (-) 1578 WP_004920722.1 sensor histidine kinase Regulator
  N5P13_RS01220 (N5P13_01220) - 260668..261303 (-) 636 WP_004920720.1 response regulator transcription factor GacA -
  N5P13_RS01225 (N5P13_01225) pbpG 261517..262575 (+) 1059 WP_004920717.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  N5P13_RS01230 (N5P13_01230) thrC 262669..263808 (-) 1140 WP_004920712.1 threonine synthase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53023.70 Da        Isoelectric Point: 6.3221

>NTDB_id=731722 N5P13_RS01210 WP_004920725.1 257636..259051(-) (pilR) [Acinetobacter baylyi strain JAT2091]
MTEQQPRVLLIDDEEDLCTLMQISLSRLGVQTDCAYNLQRAKQLLQQQHYDACLTDLNLPDGHGLDFVQYVTERFPYLPI
AVITAYGNMGIAIAALKAGAFDFVSKPINQQHLSQLIQTALHSSQTAPDNEQDTLEHRLLIGQSAPIEQLRIALRKIARS
QAPVFITGESGTGKEVVANLVHRLSNRNEGPFIALNCGAIPSELMESELFGHKKGSFTGATQDKQGLLLSAHGGSLFLDE
IAELPLTMQVKLLRAVQEKKIRPIGSDREIDVDFRVISASHQNLELLVQQGKFRQDLFFRIHVMDIQLPPLRERGQDILL
LAKHFIQHVCHEWDLPLKHLSPAAEHYLLHYDFPGNVRELRNMMERAITLSDGASIDLQQLNSSLLRQTTIPELDLTPIS
NTVSIAPTSQQNLEFPHEGLEQYLEKVEKDMLLNALNSTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDDG

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=731722 N5P13_RS01210 WP_004920725.1 257636..259051(-) (pilR) [Acinetobacter baylyi strain JAT2091]
ATGACCGAACAACAACCACGTGTTTTACTCATTGATGATGAAGAAGACCTTTGTACATTGATGCAAATCAGTCTTTCACG
TCTCGGCGTCCAGACAGATTGTGCCTACAACCTACAACGTGCCAAACAATTGTTACAACAACAACATTATGATGCCTGCC
TAACCGATCTCAACCTACCCGATGGACATGGACTTGATTTTGTTCAGTACGTTACAGAACGCTTTCCTTACTTACCCATT
GCCGTGATTACGGCGTATGGCAATATGGGCATTGCAATTGCAGCGTTAAAAGCCGGTGCTTTTGACTTTGTGAGCAAACC
CATCAATCAACAGCATCTTAGTCAACTGATTCAAACTGCACTGCATAGTAGCCAAACGGCACCAGACAATGAACAAGACA
CGCTTGAGCATCGTTTATTGATTGGTCAATCTGCACCCATTGAACAACTACGTATAGCACTTAGAAAAATTGCACGTTCG
CAGGCACCCGTATTTATTACAGGTGAGTCTGGAACAGGTAAGGAAGTGGTTGCCAATCTGGTACATCGCTTAAGCAATCG
CAATGAAGGGCCGTTTATTGCACTAAACTGTGGTGCAATTCCGTCAGAACTCATGGAGAGTGAGTTATTTGGCCATAAGA
AAGGCAGCTTCACAGGTGCCACACAAGATAAACAGGGATTACTTTTATCGGCACATGGAGGAAGTCTATTTCTGGATGAA
ATTGCAGAACTTCCTCTCACGATGCAAGTTAAATTACTACGCGCTGTTCAAGAAAAGAAAATCCGTCCAATTGGTTCAGA
TCGTGAAATTGATGTCGATTTTCGTGTGATCAGTGCCAGCCATCAGAATCTGGAACTTTTAGTCCAGCAAGGCAAATTTC
GTCAGGATTTATTCTTTCGAATTCATGTCATGGATATTCAGCTTCCTCCACTACGTGAGCGTGGACAAGATATTTTACTG
TTAGCCAAGCATTTTATTCAGCATGTTTGTCATGAATGGGACCTGCCTTTAAAGCATTTGAGCCCTGCGGCTGAACATTA
TCTACTACATTATGACTTTCCAGGAAATGTTCGGGAATTACGCAATATGATGGAACGTGCCATTACCTTAAGTGATGGAG
CATCAATAGACCTTCAGCAATTAAACAGCTCTCTACTACGCCAAACCACTATCCCAGAATTAGATTTAACACCGATTTCG
AATACAGTATCAATAGCACCAACATCTCAGCAAAATTTAGAATTTCCACATGAAGGACTTGAACAATATTTAGAAAAAGT
TGAAAAAGATATGCTGCTTAATGCGTTAAATAGTACACACTGGAATCGTACTTTAGCCGCAAAAAAATTAGGAATGAGTT
TTCGCTCTCTTCGCTATCGTCTGAAAAAATTTGGGCTTGATACTGATGATGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-307)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6FFD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

72.979

99.788

0.728
  pilR Pseudomonas aeruginosa PAK

49.024

97.877

0.48