Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N5P13_RS01215 Genome accession   NZ_CP104736
Coordinates   259069..260646 (-) Length   525 a.a.
NCBI ID   WP_004920722.1    Uniprot ID   -
Organism   Acinetobacter baylyi strain JAT2091     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 254069..265646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS01200 (N5P13_01200) gpmI 254895..256442 (+) 1548 WP_004920731.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  N5P13_RS01205 (N5P13_01205) - 256453..257634 (+) 1182 WP_004920728.1 S41 family peptidase -
  N5P13_RS01210 (N5P13_01210) pilR 257636..259051 (-) 1416 WP_004920725.1 sigma-54-dependent transcriptional regulator Regulator
  N5P13_RS01215 (N5P13_01215) pilS 259069..260646 (-) 1578 WP_004920722.1 sensor histidine kinase Regulator
  N5P13_RS01220 (N5P13_01220) - 260668..261303 (-) 636 WP_004920720.1 response regulator transcription factor GacA -
  N5P13_RS01225 (N5P13_01225) pbpG 261517..262575 (+) 1059 WP_004920717.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  N5P13_RS01230 (N5P13_01230) thrC 262669..263808 (-) 1140 WP_004920712.1 threonine synthase -
  N5P13_RS01235 (N5P13_01235) - 263869..265170 (-) 1302 WP_004920709.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 59806.29 Da        Isoelectric Point: 6.1283

>NTDB_id=731723 N5P13_RS01215 WP_004920722.1 259069..260646(-) (pilS) [Acinetobacter baylyi strain JAT2091]
MQSQLPSTMLSYTIYRLGTWYTLYRFIIAFSLLLIFYITGGRVGSDYPQPDTYFYTLIAYTLINFIQGALFRFYPKWITQ
QLSSLFIIDIIALSFLTYAVGGPNLHLGLLYVVTVFSAAILLHARMSLVMTLLAVIILVYQQIVIVLFNTDHLNAIGDSI
LLAFLFFVVYGIGQIAVRRFQILETITNYQSDILNQLQNINRYILDQVDDGYLVLDENYYVVVSNPAACNFLGIPPLFAH
EQLTLAKVQPDLFEILKSTNLQDGEKFNFESQLSTYQIHIRIQRLQIPKQSLILLTLQDTQKLNQHVQQLKLAALGQLSA
SIAHEIRNPLAAIAQANELFTDSDSAQQKQLQYMIAKQTKRINSIIEDTLGMARNHATYPVVIQLTAFLYGLLEEDLTDV
KDQIRLVFSREDLQIIFDPSQLRQVLINLTRNALRHNAPDAPFVEISVKENGDILWIDIIDYGDGVTKRNISQLFKPFFS
TEIKGTGLGLYLSHSLCEVNHAKLTYVEQEKGACFRIQCSIKENE

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=731723 N5P13_RS01215 WP_004920722.1 259069..260646(-) (pilS) [Acinetobacter baylyi strain JAT2091]
ATGCAATCTCAGCTACCATCCACCATGCTGTCTTATACCATCTATCGTTTGGGCACATGGTATACCCTGTATCGCTTTAT
TATTGCATTTAGCCTATTACTCATTTTTTATATCACGGGTGGGCGAGTTGGAAGTGATTATCCTCAACCTGATACTTACT
TTTATACCCTCATTGCCTACACACTTATCAATTTTATACAAGGTGCGCTATTTCGATTTTATCCTAAGTGGATAACGCAG
CAACTCAGTTCACTGTTTATTATCGATATTATCGCTTTAAGTTTTTTAACATATGCCGTGGGGGGTCCCAATTTACATTT
GGGGCTACTGTATGTCGTGACTGTTTTCTCGGCGGCGATTCTACTACATGCCAGAATGTCGCTGGTGATGACTCTACTGG
CGGTTATTATTCTGGTTTACCAGCAAATTGTAATTGTTTTATTTAATACAGATCACCTCAATGCGATTGGGGATAGCATT
CTACTGGCCTTTCTATTTTTCGTGGTATACGGAATCGGGCAGATTGCCGTACGCCGTTTTCAGATTCTGGAAACCATTAC
CAACTATCAGTCCGATATCTTAAATCAACTGCAAAATATCAATCGATATATTCTGGATCAGGTCGATGATGGCTATCTGG
TGTTGGATGAAAATTATTATGTTGTGGTCAGCAATCCAGCAGCCTGTAACTTTCTAGGTATCCCCCCCCTGTTCGCACAT
GAGCAGTTAACCTTGGCAAAAGTTCAACCTGATCTGTTTGAAATTTTAAAGTCTACAAATCTTCAAGATGGTGAAAAATT
CAATTTTGAATCACAGCTTTCTACTTACCAAATCCATATCCGCATTCAACGCTTACAGATTCCGAAGCAATCATTAATTT
TATTGACCTTACAAGATACCCAAAAACTCAATCAGCATGTGCAGCAGCTTAAACTGGCCGCACTCGGACAGCTTTCTGCC
AGTATTGCGCATGAAATTCGTAATCCTCTGGCAGCCATTGCTCAAGCCAATGAGTTATTTACAGATAGTGATTCTGCACA
ACAGAAACAATTGCAATATATGATTGCAAAACAGACCAAACGTATTAACAGTATTATTGAAGATACGTTAGGTATGGCTC
GTAATCATGCGACTTATCCTGTTGTGATTCAGTTGACAGCATTTTTATATGGTTTACTTGAAGAAGACCTAACCGATGTC
AAAGATCAAATTCGTCTGGTCTTTTCCCGTGAAGATCTACAAATAATTTTTGATCCATCACAGTTACGTCAAGTTCTTAT
TAATCTGACCCGTAATGCATTACGTCATAATGCACCTGATGCACCCTTCGTCGAAATTTCAGTGAAGGAAAATGGCGATA
TATTGTGGATTGATATTATTGATTATGGCGACGGCGTCACAAAAAGGAATATTTCTCAACTATTTAAGCCTTTTTTTAGT
ACCGAAATCAAAGGAACTGGTTTAGGATTATATTTGTCTCATAGTCTGTGCGAGGTCAATCATGCCAAGCTAACGTATGT
AGAACAAGAAAAAGGAGCCTGTTTTAGAATTCAGTGCTCAATAAAGGAAAACGAATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(314-376)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

61.804

99.238

0.613