Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   N5P16_RS12950 Genome accession   NZ_CP104734
Coordinates   2772597..2773301 (+) Length   234 a.a.
NCBI ID   WP_004925956.1    Uniprot ID   -
Organism   Acinetobacter baylyi strain JAT2044     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2767597..2778301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS12935 (N5P16_12935) clpB 2768590..2771169 (-) 2580 WP_004925947.1 ATP-dependent chaperone ClpB -
  N5P16_RS12940 (N5P16_12940) - 2771495..2771920 (-) 426 WP_004925953.1 GNAT family N-acetyltransferase -
  N5P16_RS12945 (N5P16_12945) - 2772026..2772451 (-) 426 WP_004925954.1 OsmC family protein -
  N5P16_RS12950 (N5P16_12950) crp 2772597..2773301 (+) 705 WP_004925956.1 cAMP-activated global transcriptional regulator CRP Regulator
  N5P16_RS12955 (N5P16_12955) - 2773462..2774508 (+) 1047 WP_004925957.1 NADP(H)-dependent aldo-keto reductase -
  N5P16_RS12960 (N5P16_12960) - 2774562..2775341 (-) 780 WP_004925958.1 M48 family metallopeptidase -
  N5P16_RS12965 (N5P16_12965) - 2775457..2775768 (-) 312 WP_004925961.1 hypothetical protein -
  N5P16_RS12970 (N5P16_12970) - 2775884..2777203 (-) 1320 WP_004925964.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26349.90 Da        Isoelectric Point: 4.6676

>NTDB_id=731707 N5P16_RS12950 WP_004925956.1 2772597..2773301(+) (crp) [Acinetobacter baylyi strain JAT2044]
MTSNFSQLSTDALSPGQLPESVKALLKKANINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEISYDNFHELSKQFPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LASQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIQTDGKAILIFDASLEEQSFHEDDEDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=731707 N5P16_RS12950 WP_004925956.1 2772597..2773301(+) (crp) [Acinetobacter baylyi strain JAT2044]
ATGACATCAAATTTCTCACAACTTAGTACAGATGCTCTATCACCAGGCCAGCTTCCCGAGTCGGTCAAGGCATTATTGAA
AAAAGCGAATATTAATCGCTACCCTAAACGTACAACGATTGTCGATGCAGGCTCTGAGTCGAAATCACTTTATCTTATTT
TAAAAGGTTCAGTTTCTATTATTTTGCGCGAAGATGATGAACGCGAAATTGTTGTTGCTTACTTAAATCCAGGCGATTTC
TTTGGCGAGATGGGTTTATTTGAGTCTAACCCACAACGTACAGCAGAAGTGAGAACCCGTGATGTCTGTGAAATTGCTGA
AATCTCTTACGACAATTTCCACGAACTGAGCAAACAGTTTCCAGACTTAAGTTACGCCGTTTTTGCTCAACTGGTGCGCC
GTTTGAAAAACACCACCCGTAAAGTCACCGATTTGGCTTTTATCGATGTTTCAGGTCGTATCGCACGTTGCTTAATTGAC
CTCGCCAGCCAGCCAGAAGCGATGATCCTGCCAAATGGCCGTCAGATTCGTATTACGCGCCAAGAGATTGGCCGTATTGT
CGGTTGCTCACGTGAAATGGTCGGTCGTGTATTAAAAACACTCGAAGAGCAAGGCATGATTCAAACTGATGGTAAAGCGA
TCCTGATTTTTGATGCTTCACTGGAAGAGCAATCATTCCATGAAGACGATGAAGATGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-119)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.735

100

0.927
  crp Vibrio cholerae strain A1552

48.058

88.034

0.423
  crp Haemophilus influenzae Rd KW20

48.718

83.333

0.406