Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/comEC   Type   Machinery gene
Locus tag   N5P16_RS06695 Genome accession   NZ_CP104734
Coordinates   1438570..1440990 (+) Length   806 a.a.
NCBI ID   WP_004928865.1    Uniprot ID   -
Organism   Acinetobacter baylyi strain JAT2044     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1433570..1445990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS06670 (N5P16_06670) - 1433705..1434643 (-) 939 WP_004928876.1 hypothetical protein -
  N5P16_RS06675 (N5P16_06675) - 1434866..1435333 (+) 468 WP_004928874.1 YaiI/YqxD family protein -
  N5P16_RS06680 (N5P16_06680) - 1435342..1436262 (+) 921 WP_004928871.1 DMT family transporter -
  N5P16_RS06685 (N5P16_06685) - 1436571..1437806 (+) 1236 WP_004928869.1 lipoprotein-releasing ABC transporter permease subunit -
  N5P16_RS06690 (N5P16_06690) - 1437799..1438485 (+) 687 WP_004928867.1 ABC transporter ATP-binding protein -
  N5P16_RS06695 (N5P16_06695) comA/comEC 1438570..1440990 (+) 2421 WP_004928865.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5P16_RS06700 (N5P16_06700) - 1440923..1441936 (-) 1014 WP_011182575.1 lysophospholipid acyltransferase family protein -
  N5P16_RS06705 (N5P16_06705) sppA 1442070..1443086 (+) 1017 WP_004928863.1 signal peptide peptidase SppA -
  N5P16_RS06710 (N5P16_06710) - 1443098..1443901 (+) 804 WP_004928859.1 alpha/beta fold hydrolase -
  N5P16_RS06715 (N5P16_06715) purN 1443961..1444590 (-) 630 WP_004928858.1 phosphoribosylglycinamide formyltransferase -
  N5P16_RS06720 (N5P16_06720) purM 1444587..1445657 (-) 1071 WP_004928857.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence


Protein


Download         Length: 806 a.a.        Molecular weight: 92065.15 Da        Isoelectric Point: 8.6568

>NTDB_id=731701 N5P16_RS06695 WP_004928865.1 1438570..1440990(+) (comA/comEC) [Acinetobacter baylyi strain JAT2044]
MFKIILLGWIAGIAMMGRTLECIEPFTCITGILTFLIWAIYFYKKRKHQIGSGLRALVILISASFLFGIGAQYADSALEE
RLYYKIMHSDTHEVIIYVHQMGESSDKGIKQVAEVLNIHPDVVNWVFYIDQSLLGAEKSSSLELGQYYRITAKTKPIHSY
ALEGAFDVEKWFVQQNWQATAQVYRIQTLSKQEVMSAGFYLHVKQQQTWRAQFLQSVEKLRLKFRNYFIDSSLSHHALLL
ALLTGDRSLLNPELEQQFQRFGISHLLAISGPHVLIFAAMVSWIFTRLIHRFKPEIYLSIPRQKLVLLPFLMCVILYCAF
VGFEIPALRTLFTVMLGSILLLIRHHLSAFSLLVLSASLLLWMDPFSILSAAFWLSYGACFILIRIYQDMTQAQQFHQTR
FTRGMQILKALVRSQWKIFVALMPLTLIIFKQISWIAPLSNLIAIPILGGIIVPLDIMAGCLWLFIPSLGNLLFYLNNSL
LELFIGILKGLDHLFNPQLQYYAFTPLLLICLTLAIVILFLPKGVVPKFWSVLCFVPLLIPSKMIRPTQISILDVGQGQS
IFIQDQTQRILLDTGGYYDESKFSIGKQVVVPFLKSQGVHQLDRVILTHLDQDHSGGLPAVLQLIPTRMIQANEEIKDLS
IPFSLCHSGQTWETSELKIQILSPKLENLQSTVFNRNEASCVMYLQLKQASDLKYFLMMGDAGWETEYQLLQQYPDLKVD
VLILGHHGSQHSSSYDFLKRYHPKIAIASAGFENGYGHPSAEVSNRLQDLNIPLLSTTDKGAIHFKFDSGNEQTEFYRQS
YKWLQR

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=731701 N5P16_RS06695 WP_004928865.1 1438570..1440990(+) (comA/comEC) [Acinetobacter baylyi strain JAT2044]
ATGTTTAAAATTATTTTATTGGGGTGGATTGCTGGCATTGCCATGATGGGCAGGACACTGGAATGCATTGAACCATTTAC
ATGCATTACAGGAATTCTGACTTTTTTGATATGGGCTATTTATTTCTACAAAAAACGAAAGCATCAGATTGGTTCTGGAT
TAAGAGCACTTGTTATCTTAATTTCTGCCAGTTTCTTATTTGGTATAGGCGCACAATACGCAGATTCTGCTCTTGAGGAA
CGCTTGTATTATAAAATAATGCATTCGGATACACATGAGGTGATTATTTACGTTCATCAAATGGGTGAATCTTCAGATAA
AGGTATAAAACAAGTCGCTGAAGTACTCAACATTCATCCTGATGTCGTGAATTGGGTATTTTATATTGATCAGAGCTTAC
TGGGGGCTGAAAAAAGCAGTAGCCTTGAGCTTGGTCAGTATTATCGAATCACTGCTAAGACCAAGCCGATACATAGCTAT
GCACTTGAAGGTGCATTTGATGTGGAAAAATGGTTTGTTCAGCAAAATTGGCAAGCGACTGCCCAAGTTTATCGTATACA
AACCTTAAGCAAACAAGAGGTGATGAGTGCAGGTTTTTATTTACATGTAAAACAGCAACAGACATGGCGAGCACAGTTTT
TACAGTCTGTTGAAAAGCTCAGGCTTAAATTTCGGAACTACTTTATAGATTCATCCTTATCACATCATGCACTCTTACTG
GCGCTCCTAACAGGAGACCGCAGTTTACTCAATCCAGAGCTTGAGCAGCAATTTCAACGTTTTGGCATTTCTCACTTGTT
GGCGATTTCGGGACCCCATGTGCTCATTTTTGCTGCCATGGTAAGCTGGATTTTTACTCGATTGATTCATCGGTTTAAAC
CAGAAATTTACTTATCAATTCCACGTCAAAAATTGGTATTACTCCCTTTTTTAATGTGTGTGATTTTATATTGTGCTTTT
GTTGGCTTTGAAATCCCTGCACTTAGAACGCTGTTTACTGTAATGCTTGGCAGTATTTTACTTTTGATACGACATCATCT
AAGTGCTTTTTCACTTTTGGTCTTGAGTGCATCCTTACTGTTATGGATGGACCCCTTTAGTATTTTATCCGCTGCATTTT
GGCTATCTTATGGTGCATGTTTTATTTTGATCAGAATTTATCAAGATATGACACAAGCACAGCAGTTTCATCAGACTCGT
TTTACGCGTGGGATGCAGATTCTAAAAGCATTGGTTAGATCACAATGGAAAATTTTTGTCGCTCTGATGCCTTTGACGTT
AATTATTTTTAAGCAAATATCATGGATTGCTCCATTATCTAATCTAATCGCAATTCCGATATTGGGCGGTATTATTGTGC
CTCTAGATATTATGGCTGGATGCTTATGGCTATTCATTCCATCACTTGGAAATCTGTTGTTTTATTTAAATAATAGCCTG
CTCGAATTATTTATCGGAATCTTAAAAGGTCTTGATCATTTATTTAATCCTCAGCTTCAATATTATGCATTTACGCCGTT
ACTACTGATTTGTCTCACTTTAGCCATTGTGATCCTATTTCTACCCAAAGGCGTGGTTCCAAAATTCTGGTCAGTTTTAT
GCTTCGTTCCACTTTTAATTCCTTCTAAAATGATTCGGCCCACTCAGATTAGTATTTTAGATGTAGGACAAGGCCAGTCA
ATTTTTATTCAGGACCAAACCCAGCGTATTTTGCTAGATACGGGTGGATACTATGATGAAAGTAAATTTAGTATTGGCAA
ACAGGTCGTGGTTCCATTCTTGAAGTCTCAAGGTGTGCATCAACTGGATCGAGTAATTTTGACTCATCTTGATCAGGATC
ATAGTGGTGGACTACCTGCAGTATTGCAATTGATCCCAACGCGTATGATTCAGGCCAATGAAGAAATTAAAGATTTATCT
ATTCCATTCTCATTGTGTCATTCTGGTCAGACTTGGGAAACATCAGAGCTAAAAATCCAGATATTGTCACCAAAATTAGA
AAATTTACAGTCTACGGTATTTAATCGTAATGAAGCGTCTTGTGTGATGTATTTACAGCTTAAACAAGCATCAGATTTAA
AGTATTTTCTGATGATGGGGGATGCAGGCTGGGAAACCGAATATCAGCTATTACAACAATATCCCGATCTTAAAGTTGAT
GTTTTAATTTTGGGGCATCATGGCAGCCAACACAGTTCATCTTATGATTTTCTCAAGAGATATCATCCCAAAATTGCGAT
TGCTTCAGCAGGGTTTGAAAATGGATATGGTCATCCGAGTGCTGAGGTAAGCAATCGTCTGCAAGATTTGAATATTCCCT
TATTGAGTACAACTGATAAGGGAGCGATTCATTTTAAGTTTGATTCAGGGAATGAGCAGACAGAATTTTATCGTCAGTCG
TATAAGTGGTTGCAGCGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baylyi ADP1

100

100

1

  comA/comEC Acinetobacter baumannii D1279779

49.691

100

0.499

  comA/comEC Acinetobacter baumannii strain A118

49.32

100

0.495