Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   N5P16_RS03630 Genome accession   NZ_CP104734
Coordinates   804640..805608 (+) Length   322 a.a.
NCBI ID   WP_004923834.1    Uniprot ID   Q9RBI7
Organism   Acinetobacter baylyi strain JAT2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 799640..810608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS03605 (N5P16_03605) rpoZ 801475..801756 (-) 282 WP_004923811.1 DNA-directed RNA polymerase subunit omega -
  N5P16_RS03610 (N5P16_03610) gmk 801825..802448 (-) 624 WP_004923822.1 guanylate kinase -
  N5P16_RS03615 (N5P16_03615) ispH 802583..803533 (+) 951 WP_004923824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N5P16_RS03620 (N5P16_03620) - 803660..804106 (+) 447 WP_004923829.1 GspH/FimT family pseudopilin -
  N5P16_RS03625 (N5P16_03625) pilV 804103..804639 (+) 537 WP_004923832.1 type IV pilus modification protein PilV Machinery gene
  N5P16_RS03630 (N5P16_03630) comB 804640..805608 (+) 969 WP_004923834.1 PilW family protein Machinery gene
  N5P16_RS03635 (N5P16_03635) pilX 805605..806273 (+) 669 WP_004923837.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35168.79 Da        Isoelectric Point: 8.7450

>NTDB_id=731693 N5P16_RS03630 WP_004923834.1 804640..805608(+) (comB) [Acinetobacter baylyi strain JAT2044]
MKISRHSGFTLVELMVAITLGLLVTAAAIQLYITGITSYNVQKAMSSIQDSASFGVNYILDDVRRANLSAPSAYMNDQQP
NSGLILTSSNVSELKDNKPLLTLNDAYLTKSAVGDGNVSQKSDQLTIRYQAVEPGYDCTGKTLPANTYVVQRYFIGSDKA
LRCVSDQYQQTGNTITGMDNKTKTTLDLSGNGQIIIPNVDYMRVQLGYVKGALNNPTAMSYVSIGDYLDTNKTSAVKKNI
NGIQQSIKPNINVIQIGLLVQSNETAGNDSIVRNRNKQAFDVLGQSVTLNEKNQDTRLRQVVTQTISLRNAMGWVEEGYV
TP

Nucleotide


Download         Length: 969 bp        

>NTDB_id=731693 N5P16_RS03630 WP_004923834.1 804640..805608(+) (comB) [Acinetobacter baylyi strain JAT2044]
ATGAAAATCTCTCGCCATTCAGGATTTACGCTAGTTGAACTCATGGTGGCCATTACATTGGGTTTGCTTGTTACAGCCGC
TGCAATTCAGCTCTATATCACAGGGATCACCAGTTACAATGTGCAAAAAGCGATGTCTAGCATTCAGGACAGTGCAAGCT
TTGGAGTCAATTATATTTTAGATGATGTACGTAGAGCCAATTTAAGTGCACCGTCTGCATATATGAATGATCAACAGCCC
AATTCAGGATTAATCCTGACGAGCAGTAATGTAAGTGAATTAAAAGACAATAAACCCTTACTCACCTTAAATGATGCTTA
TCTTACTAAATCTGCTGTAGGTGATGGAAACGTGTCACAGAAAAGTGATCAATTAACTATTCGCTATCAGGCAGTTGAGC
CGGGCTATGATTGTACAGGTAAGACATTGCCTGCGAATACCTATGTAGTTCAACGGTATTTCATAGGAAGTGATAAAGCC
TTGCGATGTGTTTCAGATCAGTACCAACAGACTGGAAATACTATTACGGGAATGGATAATAAAACAAAAACGACATTGGA
TCTTTCGGGAAATGGTCAGATTATTATTCCAAATGTTGATTATATGCGCGTTCAACTTGGATATGTTAAAGGTGCATTGA
ACAATCCAACTGCCATGAGTTATGTCTCAATTGGTGATTATTTGGATACCAATAAAACATCAGCAGTCAAAAAAAATATT
AATGGAATTCAGCAATCTATTAAGCCAAATATTAATGTGATTCAGATTGGATTATTGGTGCAATCCAATGAAACTGCTGG
AAATGACAGCATTGTTCGGAATCGTAATAAACAGGCGTTCGATGTCTTGGGGCAATCTGTCACACTCAATGAAAAAAATC
AGGATACCCGATTGCGCCAAGTAGTTACGCAAACTATTTCCTTAAGAAATGCGATGGGATGGGTTGAAGAGGGGTATGTA
ACGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Type IV Pilus-assembly protein W (PilW)

(153-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RBI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Acinetobacter baylyi ADP1

100

100

1