Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   N5P16_RS03635 Genome accession   NZ_CP104734
Coordinates   805605..806273 (+) Length   222 a.a.
NCBI ID   WP_004923837.1    Uniprot ID   Q9RBI6
Organism   Acinetobacter baylyi strain JAT2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 800605..811273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS03605 (N5P16_03605) rpoZ 801475..801756 (-) 282 WP_004923811.1 DNA-directed RNA polymerase subunit omega -
  N5P16_RS03610 (N5P16_03610) gmk 801825..802448 (-) 624 WP_004923822.1 guanylate kinase -
  N5P16_RS03615 (N5P16_03615) ispH 802583..803533 (+) 951 WP_004923824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N5P16_RS03620 (N5P16_03620) - 803660..804106 (+) 447 WP_004923829.1 GspH/FimT family pseudopilin -
  N5P16_RS03625 (N5P16_03625) pilV 804103..804639 (+) 537 WP_004923832.1 type IV pilus modification protein PilV Machinery gene
  N5P16_RS03630 (N5P16_03630) comB 804640..805608 (+) 969 WP_004923834.1 PilW family protein Machinery gene
  N5P16_RS03635 (N5P16_03635) pilX 805605..806273 (+) 669 WP_004923837.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N5P16_RS03640 (N5P16_03640) comC 806290..810642 (+) 4353 WP_004923840.1 PilC/PilY family type IV pilus protein Machinery gene
  N5P16_RS03645 (N5P16_03645) comE 810704..811213 (+) 510 WP_004923843.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24146.41 Da        Isoelectric Point: 8.4731

>NTDB_id=731694 N5P16_RS03635 WP_004923837.1 805605..806273(+) (pilX) [Acinetobacter baylyi strain JAT2044]
MKKQQQGATLIIVLMILLLIMVVGTLAIRQSISSLKMVSNNQIQALLLQNSDAALMYFQNPVNTTTLAAPDGVVNYFRNN
SNNTQELVTCFNKTDPFRLVRMGTVNSSGKVDNQASCKSTDASGGRNQVVTQVYITKVSSTNNQPFADLARGTDITTAKT
ESSVRLRLTSVSVLTGFISSDDLANCLNKSSANAVSCLSEQQALYNSQVAEYRFLSDFEPPQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=731694 N5P16_RS03635 WP_004923837.1 805605..806273(+) (pilX) [Acinetobacter baylyi strain JAT2044]
ATGAAAAAACAACAACAAGGTGCGACCCTCATCATCGTATTGATGATTCTCTTACTGATTATGGTGGTGGGTACTTTAGC
GATTCGGCAAAGTATCAGTTCATTAAAAATGGTATCGAATAATCAGATACAGGCATTATTGTTGCAAAACTCAGATGCTG
CATTAATGTATTTTCAAAACCCCGTCAATACTACAACGCTTGCTGCACCAGATGGTGTAGTTAACTATTTTCGTAATAAC
AGCAACAATACGCAGGAACTAGTCACTTGCTTCAACAAGACAGATCCATTTCGTTTGGTCAGAATGGGAACAGTGAATAG
TTCAGGTAAGGTAGACAATCAGGCTTCTTGTAAAAGTACAGATGCGTCAGGTGGTCGTAATCAGGTCGTGACACAGGTTT
ATATTACAAAAGTCTCATCTACAAATAACCAGCCATTTGCAGATCTGGCACGTGGTACGGATATCACAACAGCTAAAACA
GAAAGTAGTGTGCGGTTACGCTTAACCTCTGTATCAGTGCTAACGGGATTTATATCTTCGGACGATTTAGCCAATTGTTT
AAATAAAAGTTCTGCAAATGCGGTGTCCTGCTTAAGTGAGCAGCAAGCTTTATATAATTCGCAAGTTGCAGAATATCGTT
TCTTGTCAGATTTTGAACCACCACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RBI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

100

100

1