Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   N5P16_RS03625 Genome accession   NZ_CP104734
Coordinates   804103..804639 (+) Length   178 a.a.
NCBI ID   WP_004923832.1    Uniprot ID   -
Organism   Acinetobacter baylyi strain JAT2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 799103..809639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS03605 (N5P16_03605) rpoZ 801475..801756 (-) 282 WP_004923811.1 DNA-directed RNA polymerase subunit omega -
  N5P16_RS03610 (N5P16_03610) gmk 801825..802448 (-) 624 WP_004923822.1 guanylate kinase -
  N5P16_RS03615 (N5P16_03615) ispH 802583..803533 (+) 951 WP_004923824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N5P16_RS03620 (N5P16_03620) - 803660..804106 (+) 447 WP_004923829.1 GspH/FimT family pseudopilin -
  N5P16_RS03625 (N5P16_03625) pilV 804103..804639 (+) 537 WP_004923832.1 type IV pilus modification protein PilV Machinery gene
  N5P16_RS03630 (N5P16_03630) comB 804640..805608 (+) 969 WP_004923834.1 PilW family protein Machinery gene
  N5P16_RS03635 (N5P16_03635) pilX 805605..806273 (+) 669 WP_004923837.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19136.80 Da        Isoelectric Point: 8.4743

>NTDB_id=731692 N5P16_RS03625 WP_004923832.1 804103..804639(+) (pilV) [Acinetobacter baylyi strain JAT2044]
MSKMRAQRGVGMVEVLVALLLLAIGVLGFTALQLRAVSASMEASNQVLALNLARDLTERMRANPQATQCKLYHTEGALAK
DTKAYTKASNCSGSVSTQATAQANSDLLFIYNQANTLGMAVIINTCPNATNAGNNLGRQCVYIAWDKTAQNFTNSDTCYK
SGGSSYERNTTCLFLEAY

Nucleotide


Download         Length: 537 bp        

>NTDB_id=731692 N5P16_RS03625 WP_004923832.1 804103..804639(+) (pilV) [Acinetobacter baylyi strain JAT2044]
ATGAGCAAGATGAGAGCACAGCGTGGTGTGGGGATGGTCGAGGTTTTGGTGGCGCTGCTGTTGCTGGCAATAGGTGTACT
TGGATTTACCGCCTTACAATTACGTGCGGTAAGTGCCAGTATGGAGGCGAGTAATCAGGTTCTGGCTTTGAATTTGGCGC
GTGATCTGACTGAACGTATGCGAGCTAATCCTCAAGCTACTCAATGTAAGCTTTATCATACCGAAGGTGCATTGGCTAAA
GATACTAAAGCCTATACCAAAGCATCAAATTGTTCGGGTTCTGTGAGCACTCAAGCCACGGCTCAGGCAAATAGTGATCT
TTTATTTATCTATAATCAGGCTAATACTTTAGGTATGGCGGTAATTATTAACACCTGTCCAAATGCCACAAATGCAGGCA
ATAATTTGGGGCGACAGTGTGTTTATATTGCTTGGGATAAAACTGCACAGAACTTTACCAACTCTGACACCTGTTACAAA
AGTGGTGGAAGTAGTTATGAGCGAAATACAACGTGTTTGTTTCTGGAGGCGTACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

100

100

1
  pilV Acinetobacter baumannii D1279779

41.398

100

0.433