Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N5P21_RS28180 Genome accession   NZ_CP104727
Coordinates   6410495..6411832 (+) Length   445 a.a.
NCBI ID   WP_116422680.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5.80     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6405495..6416832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P21_RS28155 (N5P21_28175) pgeF 6405688..6406416 (-) 729 WP_261746936.1 peptidoglycan editing factor PgeF -
  N5P21_RS28160 (N5P21_28180) rluD 6406413..6407372 (-) 960 WP_261746937.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N5P21_RS28165 (N5P21_28185) - 6407519..6408532 (+) 1014 WP_253390062.1 outer membrane protein assembly factor BamD -
  N5P21_RS28170 (N5P21_28190) - 6408671..6408901 (+) 231 WP_009617584.1 PP0621 family protein -
  N5P21_RS28175 (N5P21_28195) pilS 6408894..6410483 (+) 1590 WP_261746938.1 PAS domain-containing sensor histidine kinase Regulator
  N5P21_RS28180 (N5P21_28200) pilR 6410495..6411832 (+) 1338 WP_116422680.1 sigma-54 dependent transcriptional regulator Regulator
  N5P21_RS28185 (N5P21_28205) thiO 6412589..6413698 (-) 1110 WP_261746939.1 glycine oxidase ThiO -
  N5P21_RS28190 (N5P21_28210) - 6413877..6414389 (+) 513 WP_253390058.1 GspH/FimT family protein -
  N5P21_RS32705 - 6414437..6415012 (+) 576 WP_301499942.1 GspH/FimT family pseudopilin -
  N5P21_RS28205 (N5P21_28225) pilV 6415009..6415488 (+) 480 WP_261746940.1 type IV pilus modification protein PilV -
  N5P21_RS28210 (N5P21_28230) - 6415485..6416132 (+) 648 WP_261746941.1 PilW family protein -
  N5P21_RS28215 (N5P21_28235) - 6416132..6416599 (+) 468 WP_261746942.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49554.80 Da        Isoelectric Point: 5.6352

>NTDB_id=731606 N5P21_RS28180 WP_116422680.1 6410495..6411832(+) (pilR) [Pseudomonas citronellolis strain G5.80]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLASDSGLAAAQVSPEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPNDLRFAEATGGSESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=731606 N5P21_RS28180 WP_116422680.1 6410495..6411832(+) (pilR) [Pseudomonas citronellolis strain G5.80]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCAAGGAATACCTGGCCCGAGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGCGCGGAAGACGCGCCGGTGGACAACC
GCCTGCTGGGCGACTCGCCGCCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAAGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAACAGGGCCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTGAACTGCGGCGCCATTCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGCGGCACTCTGTTCCTCGACGAGGTGGCCGACCTGCCG
TTGCCGATGCAAGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCGGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTCCGCGTGCTCTGCGCCACCCACAAGGACCTGGCCGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGTTGCTCACCGAGCGCGTG
CTCAAGCGCCTGGCCAGCGACAGCGGCCTGGCCGCGGCACAGGTCAGCCCCGAAGCCCTGGAAAAGCTCAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAAGACGACGTCATCCAGCCCA
ACGACCTTCGTTTCGCCGAGGCCACGGGCGGCAGTGAAAGCGGCGAGGCCAGCCTGGCGCAAATCGACAATCTCGAGGAT
TACCTCGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCCGCAGCCCAGCG
ATTGGGTCTGACGTTCCGCTCGATGCGCTATCGCTTGAAGAAGCTGGGTATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.989

100

0.89
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515