Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N5P21_RS28175 Genome accession   NZ_CP104727
Coordinates   6408894..6410483 (+) Length   529 a.a.
NCBI ID   WP_261746938.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5.80     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6403894..6415483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P21_RS28155 (N5P21_28175) pgeF 6405688..6406416 (-) 729 WP_261746936.1 peptidoglycan editing factor PgeF -
  N5P21_RS28160 (N5P21_28180) rluD 6406413..6407372 (-) 960 WP_261746937.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N5P21_RS28165 (N5P21_28185) - 6407519..6408532 (+) 1014 WP_253390062.1 outer membrane protein assembly factor BamD -
  N5P21_RS28170 (N5P21_28190) - 6408671..6408901 (+) 231 WP_009617584.1 PP0621 family protein -
  N5P21_RS28175 (N5P21_28195) pilS 6408894..6410483 (+) 1590 WP_261746938.1 PAS domain-containing sensor histidine kinase Regulator
  N5P21_RS28180 (N5P21_28200) pilR 6410495..6411832 (+) 1338 WP_116422680.1 sigma-54 dependent transcriptional regulator Regulator
  N5P21_RS28185 (N5P21_28205) thiO 6412589..6413698 (-) 1110 WP_261746939.1 glycine oxidase ThiO -
  N5P21_RS28190 (N5P21_28210) - 6413877..6414389 (+) 513 WP_253390058.1 GspH/FimT family protein -
  N5P21_RS32705 - 6414437..6415012 (+) 576 WP_301499942.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58514.64 Da        Isoelectric Point: 7.0166

>NTDB_id=731605 N5P21_RS28175 WP_261746938.1 6408894..6410483(+) (pilS) [Pseudomonas citronellolis strain G5.80]
MAKAIPISGQQGQRILRLYHLYRLSIGLLLVLLISSDLDDRVLNVSQSTLFHASCWSYLIVNILIAVLMPTPRQLLPIFL
LALFDILALCGLFYAAGGVPSGIGNLLVVAVGIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPAAINHYVQAGSLGA
LSFAAALLLQGLARRQQLTEHLAEERATTVANLEELNALILQRMRTGILVLDSRHYVLLANQSALSLLAQPELVGKLATE
RCPELLESLQQWVQNPSLRPPSLQAPEGGPMLQPSFIPLRRGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLQESEALDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQQLDLKEWLQRFTDEQREGLRGDQ
QIHLQLGIGEIQTRMDPSQLTQVLGNLVQNGLRYSARQNGSGQVWLNLFRDRDSDLPVLEVLDDGPGIAPEQLGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGSFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=731605 N5P21_RS28175 WP_261746938.1 6408894..6410483(+) (pilS) [Pseudomonas citronellolis strain G5.80]
ATGGCTAAGGCCATCCCCATCAGTGGCCAGCAGGGGCAGCGCATCCTCCGCCTGTACCACCTGTACCGTCTGAGCATCGG
CCTGCTGCTGGTGCTGCTGATCTCCAGCGACCTGGACGACCGGGTGCTCAACGTCAGCCAGTCCACGCTGTTCCATGCCA
GTTGCTGGAGCTACCTGATCGTCAACATCCTGATCGCCGTGCTGATGCCGACGCCGCGCCAGCTGCTGCCGATCTTCCTC
CTGGCGCTGTTCGACATCCTCGCGCTGTGCGGCCTGTTCTACGCCGCCGGCGGCGTGCCCAGCGGCATCGGCAATCTGCT
GGTGGTGGCGGTGGGCATCGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCGATCGGCA
TGATCTACCTGACCTTCTACCTCAGCCTCAGCCAGCCCGCGGCGATCAACCACTACGTGCAGGCCGGCAGCCTCGGCGCC
CTGAGCTTCGCCGCCGCCCTGCTGCTGCAGGGCCTGGCGCGACGCCAGCAACTCACCGAGCACCTGGCCGAGGAACGCGC
CACCACCGTGGCCAACCTCGAAGAGCTCAACGCCCTCATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACAGCC
GGCACTACGTGCTGCTGGCCAACCAGAGCGCCCTGAGCCTGCTGGCGCAGCCGGAGCTGGTGGGCAAGCTCGCCACCGAA
CGTTGCCCGGAACTGCTCGAAAGCCTGCAACAGTGGGTACAGAACCCCTCGCTGCGCCCGCCGAGCCTGCAGGCGCCCGA
AGGCGGCCCCATGCTGCAGCCGAGCTTCATCCCGCTGCGCCGCGGCGAGGAACAGCACACCCTGGTATTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCGGCCCTGGGCCGGCTGACCGCCGGCATCGCCCACGAGATC
CGCAACCCGCTGGGCGCCATCAGCCACGCCGCGCAGCTGCTGCAGGAGTCCGAAGCGCTCGACGCCCCCGACCGGCGCCT
GACGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTGATCGAGAACGTCCTGCAATTGTCGCGGCGGCGCCAGG
CCGAGCCGCAACAGCTGGACCTCAAGGAGTGGCTGCAGCGCTTCACCGACGAGCAGCGCGAAGGCCTGCGCGGCGACCAG
CAGATCCACCTGCAACTGGGCATCGGCGAGATCCAGACGCGCATGGACCCCAGCCAACTCACCCAGGTGCTGGGTAACCT
GGTGCAGAATGGGTTACGGTACAGTGCCCGGCAGAACGGCAGCGGCCAGGTGTGGTTGAACCTGTTCCGCGACCGGGACA
GCGACCTGCCGGTGCTGGAGGTGCTCGACGACGGCCCCGGCATCGCCCCGGAGCAGCTGGGCAAGCTGTTCGAACCCTTC
TTCACCACCGAGAGCAAGGGCACCGGGCTGGGCCTGTACATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCGCATCGA
CTTCAAGAACCGCGACGAAGGCGGTGGCAGCTTCCGCATCACCTTCGCCCACCCGCGCAAGCAGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

73.485

99.811

0.733