Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N5P21_RS23920 Genome accession   NZ_CP104727
Coordinates   5468601..5470808 (-) Length   735 a.a.
NCBI ID   WP_261748785.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5.80     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5463601..5475808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P21_RS23885 (N5P21_23905) murB 5463971..5464990 (-) 1020 WP_249919275.1 UDP-N-acetylmuramate dehydrogenase -
  N5P21_RS23890 (N5P21_23910) - 5464987..5465448 (-) 462 WP_074979864.1 low molecular weight protein-tyrosine-phosphatase -
  N5P21_RS23895 (N5P21_23915) kdsB 5465448..5466212 (-) 765 WP_074979865.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5P21_RS23900 (N5P21_23920) - 5466226..5466411 (-) 186 WP_009621404.1 Trm112 family protein -
  N5P21_RS23905 (N5P21_23925) lpxK 5466452..5467450 (-) 999 WP_074979866.1 tetraacyldisaccharide 4'-kinase -
  N5P21_RS23910 (N5P21_23930) - 5467450..5467896 (-) 447 WP_074979867.1 biopolymer transporter ExbD -
  N5P21_RS23915 (N5P21_23935) exbB 5467893..5468528 (-) 636 WP_074979868.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N5P21_RS23920 (N5P21_23940) comA 5468601..5470808 (-) 2208 WP_261748785.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5P21_RS23925 (N5P21_23945) - 5470945..5471475 (+) 531 WP_261746661.1 DUF2062 domain-containing protein -
  N5P21_RS23930 (N5P21_23950) - 5471966..5473216 (-) 1251 WP_261746662.1 lipoprotein-releasing ABC transporter permease subunit -
  N5P21_RS23935 (N5P21_23955) lolD 5473233..5473916 (-) 684 WP_064582523.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  N5P21_RS23940 (N5P21_23960) - 5473909..5475162 (-) 1254 WP_261746663.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 78552.85 Da        Isoelectric Point: 7.7332

>NTDB_id=731601 N5P21_RS23920 WP_261748785.1 5468601..5470808(-) (comA) [Pseudomonas citronellolis strain G5.80]
MMALACGLLLLRFLPQLSPLAALLPLVGMALLCLYRRHHAVALFLLGFAWACLFAHDSWEGRLAPELDGRTLWLEGQVAG
LPATADGIVRFELEDVQARLELPGRIRVSWYGGPEVRAGERWRLAVTLRRPHGLANDFGFDYEAWLAADGIGATGSVKDG
RRLAEAAGPMAWREAWKDRLLAVDAQGRNAYLVALVLGDGSGLGREDWDMLQDTGTLHLMVISGSHISLLGGLLYALVAG
LACLGAWPARIPWLPCACAVALAGAWGYGWIAGLQVPALRACLMLSMVLLWRLHFRRQGVWLPLLGALLVVLLVDPLVSL
TPGFWLSFAAVALLVYGFAGRLGRGAGWLAWVRAQWLMALGLAPVLLALGLPLSPAGALANLVAVPCVELLVVPLALIGS
LLLWLPVVGEGLLWLAGGVLDVLLGLLGRLSLYSPAWHPMAPPPWSIALALFGALLCLAPAGLPLRPLGLALLLPMFWPH
SSAPPHGHAEVRVLDVGQGLSVLIRTRHHAWLYDAGPRRGDFDLGEVAVLPTLRGLGVERLDVLLLSHADNDHAGGARSV
SAAMPVTRIISGEPGRLPGSLPADPCGNEAWQLDGVRFSTWQWSGAMDSNGRSCVLHVEAGGESLLLTGDLPAAGEAAWL
ASHPGLGADWLLAGHHGSRSASSEAFVRQLAPRAALVSRSRHNAHGHPSSEVLQRFAEQGTKVHDVAREGALRLLLGQRG
ALRGVRENAGFWREK

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=731601 N5P21_RS23920 WP_261748785.1 5468601..5470808(-) (comA) [Pseudomonas citronellolis strain G5.80]
ATGATGGCGCTGGCCTGCGGCCTGTTGCTGTTGCGTTTCCTGCCCCAGCTGTCACCCCTGGCGGCCCTGCTGCCATTGGT
CGGAATGGCGCTGCTGTGCCTGTATCGGCGACATCACGCGGTGGCGCTCTTCCTGCTCGGCTTCGCCTGGGCCTGCCTGT
TCGCCCATGACTCGTGGGAAGGGCGCCTGGCTCCCGAACTGGACGGGCGGACGCTGTGGCTGGAAGGGCAGGTTGCCGGC
CTGCCGGCTACCGCGGATGGCATCGTCCGCTTCGAGCTGGAGGACGTCCAGGCGCGCCTGGAACTGCCCGGGCGCATCCG
CGTGTCCTGGTATGGCGGCCCGGAGGTGCGGGCCGGGGAGCGCTGGCGCCTGGCGGTCACCCTGCGTCGCCCCCATGGCC
TGGCCAACGACTTCGGTTTCGACTATGAAGCCTGGCTGGCGGCCGACGGCATAGGCGCCACCGGCAGCGTCAAGGATGGC
CGGCGCCTGGCCGAGGCCGCCGGCCCCATGGCCTGGCGCGAAGCCTGGAAGGACCGGCTGCTGGCGGTGGATGCCCAAGG
CCGCAACGCCTACCTGGTGGCCCTGGTCCTCGGCGACGGCAGTGGCCTGGGCCGGGAAGACTGGGACATGCTGCAGGACA
CCGGCACCCTGCACCTGATGGTGATCTCCGGCTCGCACATCTCCCTGCTGGGCGGCTTGCTCTACGCCCTGGTGGCGGGT
CTGGCGTGCCTGGGAGCCTGGCCGGCGCGCATCCCCTGGCTGCCCTGCGCCTGTGCCGTTGCACTGGCTGGCGCCTGGGG
CTATGGCTGGATCGCCGGACTGCAGGTGCCGGCGCTGCGCGCCTGCCTGATGCTCAGCATGGTGCTGCTGTGGCGCCTGC
ACTTTCGTCGCCAGGGCGTATGGCTGCCGCTGCTCGGTGCTCTGCTGGTGGTGTTGTTGGTCGATCCGCTGGTCAGCCTG
ACGCCCGGCTTCTGGCTGTCCTTCGCCGCCGTGGCGCTGCTCGTCTACGGCTTCGCCGGGCGTCTGGGACGCGGGGCCGG
CTGGCTGGCCTGGGTACGCGCGCAGTGGCTCATGGCCCTTGGCCTGGCCCCGGTGCTGCTGGCCCTGGGTCTGCCGCTGA
GCCCCGCCGGCGCCCTGGCGAACCTGGTGGCGGTGCCCTGCGTCGAACTGCTGGTGGTGCCGCTGGCACTGATCGGTAGC
CTGCTGCTATGGCTGCCGGTGGTGGGCGAGGGGCTGCTGTGGCTGGCGGGTGGCGTGCTCGACGTGCTGCTGGGCCTGCT
CGGGCGCCTGTCGCTGTACTCGCCGGCCTGGCACCCCATGGCGCCGCCGCCCTGGAGCATCGCCCTGGCCCTGTTCGGCG
CGCTGCTGTGCCTGGCGCCGGCCGGGCTGCCGCTGCGTCCGCTGGGCCTGGCGTTGCTGCTGCCGATGTTCTGGCCGCAT
TCCAGTGCGCCGCCCCACGGTCATGCCGAAGTGCGGGTGCTGGACGTGGGCCAGGGGCTGTCCGTGCTGATCCGCACCCG
TCACCACGCCTGGCTGTACGATGCCGGGCCGCGCCGGGGCGATTTCGACCTCGGCGAGGTGGCGGTGCTGCCGACCCTCC
GTGGCCTGGGCGTCGAACGCCTGGACGTGCTGCTGCTCAGCCATGCCGACAACGACCACGCCGGCGGTGCCCGCTCGGTG
TCGGCGGCCATGCCGGTGACGCGGATCATCAGCGGCGAGCCCGGGCGCCTGCCGGGCAGCCTACCTGCCGATCCTTGCGG
CAACGAAGCGTGGCAGCTGGACGGCGTGCGCTTCTCCACCTGGCAGTGGTCCGGCGCGATGGACAGCAACGGCCGCTCCT
GCGTGCTGCACGTCGAGGCCGGCGGCGAGAGCCTGCTGCTCACCGGCGACCTGCCGGCCGCAGGCGAGGCCGCCTGGTTG
GCCAGCCATCCAGGGCTTGGTGCCGACTGGCTGCTGGCCGGCCACCATGGCAGCCGCAGCGCCTCTTCCGAGGCCTTCGT
CAGGCAGCTGGCGCCCCGCGCGGCGCTGGTTTCCCGTTCGCGCCACAATGCCCATGGCCATCCGTCCAGCGAGGTGCTGC
AACGCTTTGCCGAGCAGGGGACGAAGGTGCACGATGTGGCCCGGGAGGGTGCCCTGCGCCTGCTCCTGGGCCAGCGTGGA
GCGCTGCGCGGCGTGCGCGAAAATGCCGGATTCTGGAGGGAAAAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(17-162)

Competence protein (Competence)

(195-458)

Metallo-beta-lactamase superfamily (Lactamase_B)

(495-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.483

97.279

0.559
  comA Ralstonia pseudosolanacearum GMI1000

34.914

100

0.361