Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N5P21_RS23915 Genome accession   NZ_CP104727
Coordinates   5467893..5468528 (-) Length   211 a.a.
NCBI ID   WP_074979868.1    Uniprot ID   A0AAQ1HM04
Organism   Pseudomonas citronellolis strain G5.80     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5462893..5473528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P21_RS23885 (N5P21_23905) murB 5463971..5464990 (-) 1020 WP_249919275.1 UDP-N-acetylmuramate dehydrogenase -
  N5P21_RS23890 (N5P21_23910) - 5464987..5465448 (-) 462 WP_074979864.1 low molecular weight protein-tyrosine-phosphatase -
  N5P21_RS23895 (N5P21_23915) kdsB 5465448..5466212 (-) 765 WP_074979865.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5P21_RS23900 (N5P21_23920) - 5466226..5466411 (-) 186 WP_009621404.1 Trm112 family protein -
  N5P21_RS23905 (N5P21_23925) lpxK 5466452..5467450 (-) 999 WP_074979866.1 tetraacyldisaccharide 4'-kinase -
  N5P21_RS23910 (N5P21_23930) - 5467450..5467896 (-) 447 WP_074979867.1 biopolymer transporter ExbD -
  N5P21_RS23915 (N5P21_23935) exbB 5467893..5468528 (-) 636 WP_074979868.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N5P21_RS23920 (N5P21_23940) comA 5468601..5470808 (-) 2208 WP_261748785.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5P21_RS23925 (N5P21_23945) - 5470945..5471475 (+) 531 WP_261746661.1 DUF2062 domain-containing protein -
  N5P21_RS23930 (N5P21_23950) - 5471966..5473216 (-) 1251 WP_261746662.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22946.15 Da        Isoelectric Point: 8.0527

>NTDB_id=731600 N5P21_RS23915 WP_074979868.1 5467893..5468528(-) (exbB) [Pseudomonas citronellolis strain G5.80]
MWELVKAGGWMMLPIILSSIAATAIVAERLWTLRRSRIAPPQLLGQVWKQIKDKKLNSQALKELKASSPLGEVLAAGLVN
SKHGREIMKECIEEAAGRVIHEMERYLNALGTIAAMAPLLGLLGTVFGMIQIFNAFMGDGMANAPQLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=731600 N5P21_RS23915 WP_074979868.1 5467893..5468528(-) (exbB) [Pseudomonas citronellolis strain G5.80]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCATCGCCCCGCCGCAGCTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGCTGAACAGCCAGGCGCTCAAGGAGCTCAAGGCGTCTTCCCCGCTGGGCGAGGTGCTCGCCGCCGGCCTGGTCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGGCCGGGTGATCCACGAGATGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCGTTGCTCGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCA
ACGCCTTCATGGGCGACGGCATGGCCAACGCCCCGCAGCTCGCCGGCGGCATCTCCAAGGCCCTGGTGACCACCGCCTCC
GGCCTGATCGTGGCCATCCCGGCGGTGTTCTTCCACCGCTACCTGCTGCGCCGCGTCGATGAGCTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGCGATCGCGAGGTTGACCTCTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.095

100

0.801