Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GZN30_RS14265 Genome accession   NZ_AP019657
Coordinates   3161561..3162193 (-) Length   210 a.a.
NCBI ID   WP_005597159.1    Uniprot ID   A0A7W2ITN8
Organism   Vibrio ponticus strain DSM 16217     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3156561..3167193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZN30_RS14250 astA 3157703..3158722 (+) 1020 WP_075651884.1 arginine N-succinyltransferase -
  GZN30_RS14255 astD 3158748..3160205 (+) 1458 WP_075651886.1 succinylglutamate-semialdehyde dehydrogenase -
  GZN30_RS14260 - 3160319..3161110 (+) 792 WP_075651888.1 DUF1338 domain-containing protein -
  GZN30_RS14265 crp 3161561..3162193 (-) 633 WP_005597159.1 cAMP-activated global transcriptional regulator CRP Regulator
  GZN30_RS14270 - 3162592..3163461 (-) 870 WP_075651078.1 phosphoribulokinase -
  GZN30_RS14275 - 3163654..3163866 (-) 213 WP_075651076.1 YheU family protein -
  GZN30_RS14280 - 3163920..3164894 (-) 975 WP_075651074.1 hydrolase -
  GZN30_RS14285 - 3164891..3165379 (-) 489 WP_075651072.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23681.48 Da        Isoelectric Point: 7.8388

>NTDB_id=73137 GZN30_RS14265 WP_005597159.1 3161561..3162193(-) (crp) [Vibrio ponticus strain DSM 16217]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=73137 GZN30_RS14265 WP_005597159.1 3161561..3162193(-) (crp) [Vibrio ponticus strain DSM 16217]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCATGCGGGCGAGAAAGCAGAAACTTTGTACTACATCGTTAAGGGTTCTGTTGCGGTTCTTATCAAGG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGATTTCATCGGTGAGCTTGGTCTATTTGAAGAAGAT
CAAGAGCGCACAGCTTGGGTTCGTGCCAAGTCTCCTTGTGAAGTAGCTGAAATTTCATTTAAGAAATTCCGTCAACTTAT
CCAAGTAAACCCAGACATTCTTATGCGTCTGTCTTCGCAAATGGCACGTCGCCTACAAGTGACTAGCCAAAAAGTGGGTG
ACCTAGCATTCCTAGATGTAACTGGTCGTATCGCGCAAACGCTACTAAACCTAGCGAAACAACCTGATGCGATGACTCAC
CCAGACGGCATGCAAATCAAGATCACACGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACGGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCTCACGGTAAAACTATCGTTGTGTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2ITN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment