Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   N5980_RS14290 Genome accession   NZ_CP104651
Coordinates   2945006..2945332 (-) Length   108 a.a.
NCBI ID   WP_125279773.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2940006..2950332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS14270 (N5980_14260) - 2940209..2940868 (-) 660 WP_125279769.1 FHA domain-containing protein -
  N5980_RS14275 (N5980_14265) gspD 2940931..2943180 (-) 2250 WP_125279770.1 type II secretion system secretin GspD -
  N5980_RS14280 (N5980_14270) - 2943219..2944076 (-) 858 WP_125279771.1 type II secretion system protein N -
  N5980_RS14285 (N5980_14275) gspN 2944076..2944819 (-) 744 WP_261635126.1 type II secretion system protein N -
  N5980_RS14290 (N5980_14280) hns 2945006..2945332 (-) 327 WP_125279773.1 H-NS family nucleoid-associated regulatory protein Regulator
  N5980_RS14295 (N5980_14285) - 2945485..2945910 (-) 426 WP_004781650.1 acyl-CoA thioesterase -
  N5980_RS14300 (N5980_14290) - 2945918..2947111 (-) 1194 WP_214001679.1 heme biosynthesis protein HemY -
  N5980_RS14305 (N5980_14295) - 2947118..2947957 (-) 840 WP_214001680.1 hypothetical protein -
  N5980_RS14310 (N5980_14300) - 2947965..2948732 (-) 768 WP_214001681.1 uroporphyrinogen-III synthase -
  N5980_RS14315 (N5980_14305) hemC 2948732..2949655 (-) 924 WP_180031052.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12381.19 Da        Isoelectric Point: 7.0205

>NTDB_id=731264 N5980_RS14290 WP_125279773.1 2945006..2945332(-) (hns) [Acinetobacter variabilis strain 2021CK-01005]
MMPDITNLSVEELKRLQAEAESLIALKKDQEIENAYHQVLEIADKVGLTIEQLLEFGASKRKKTARKSVEPRYRSKSNPE
DTWTGRGKQPRWLVAELEKGAKLEDFVI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=731264 N5980_RS14290 WP_125279773.1 2945006..2945332(-) (hns) [Acinetobacter variabilis strain 2021CK-01005]
ATGATGCCGGACATTACAAATTTATCAGTTGAAGAGTTAAAACGTTTACAAGCAGAAGCTGAGTCTTTAATTGCTTTGAA
AAAAGATCAGGAAATTGAAAATGCTTATCATCAGGTATTGGAGATTGCCGATAAGGTAGGCTTAACGATTGAACAGCTTC
TTGAATTTGGTGCTTCTAAACGTAAAAAAACTGCACGTAAGTCTGTAGAGCCACGTTATCGCAGTAAAAGCAATCCGGAA
GACACTTGGACTGGTCGCGGTAAACAGCCACGCTGGTTAGTTGCTGAATTAGAGAAGGGCGCAAAACTGGAAGATTTTGT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

77.778

100

0.778