Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   N5980_RS09805 Genome accession   NZ_CP104651
Coordinates   1989011..1989718 (-) Length   235 a.a.
NCBI ID   WP_005235028.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1984011..1994718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS09790 (N5980_09785) clpB 1984423..1987002 (-) 2580 WP_175967300.1 ATP-dependent chaperone ClpB -
  N5980_RS09795 (N5980_09790) - 1987257..1987622 (-) 366 WP_005235031.1 MbcA/ParS/Xre antitoxin family protein -
  N5980_RS09800 (N5980_09795) - 1987768..1988817 (-) 1050 WP_214001389.1 NADP(H)-dependent aldo-keto reductase -
  N5980_RS09805 (N5980_09800) crp 1989011..1989718 (-) 708 WP_005235028.1 cAMP-activated global transcriptional regulator CRP Regulator
  N5980_RS09810 (N5980_09805) - 1989866..1990288 (+) 423 WP_004782528.1 OsmC family protein -
  N5980_RS09815 (N5980_09810) - 1990332..1991375 (-) 1044 WP_214001390.1 metallophosphoesterase -
  N5980_RS09820 (N5980_09815) - 1991622..1993859 (-) 2238 WP_034170011.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26314.04 Da        Isoelectric Point: 4.7380

>NTDB_id=731256 N5980_RS09805 WP_005235028.1 1989011..1989718(-) (crp) [Acinetobacter variabilis strain 2021CK-01005]
MTSNFSQLSTDALSPGQLPVSVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEPEALGAGEFEDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=731256 N5980_RS09805 WP_005235028.1 1989011..1989718(-) (crp) [Acinetobacter variabilis strain 2021CK-01005]
ATGACTTCAAACTTTTCACAATTAAGCACAGACGCACTTTCGCCGGGGCAACTACCTGTATCAGTGAAAGCGTTATTAAA
ACGTGCATATATCAATCGCTATCCAAAACGTACCACGATCGTGGATGCAGGGTCAGAATCTAAATCTCTGTATTTAATTC
TGAAGGGGTCTGTGTCTATCATTCTTCGTGAAGATGATGAACGTGAGATTGTGGTAGCTTATTTAAATGCGGGAGACTTC
TTTGGGGAAATGGGTCTTTTCGAAGCAAATCCACAGCGTACTGCGGAAGTGCGTACTCGTGATGTCTGTGAAATTGCTGA
AATTACCTATGAAAACTTTCATGAAATTAGCAAACAATATCCAGACCTAAGCTATGCAGTTTTTGCCCAGCTGGTTCGCC
GTCTGAAAAATACCACACGTAAAGTGACTGACCTGGCATTTATTGATGTATCTGGTCGTATTGCGCGTTGTCTGATTGAC
CTGTCATCTCAGCCAGAAGCGATGATCTTGCCAAATGGTCGTCAAATCCGTATTACCCGTCAGGAAATCGGCCGTATTGT
AGGCTGTTCACGTGAAATGGTCGGTCGTGTTCTAAAAACTCTAGAAGAACAGGGCATGATTGAAACCGATGGTAAGGCGA
TTCTGATTTTTGATGCATCGCTGGAAGAACCTGAAGCACTGGGTGCTGGCGAGTTCGAAGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.619

94.894

0.898
  crp Vibrio cholerae strain A1552

47.716

83.83

0.4
  crp Haemophilus influenzae Rd KW20

47.692

82.979

0.396