Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   N5980_RS04085 Genome accession   NZ_CP104651
Coordinates   847478..847861 (+) Length   127 a.a.
NCBI ID   WP_004784987.1    Uniprot ID   N9NVI8
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 842478..852861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS04075 (N5980_04075) - 845372..846499 (-) 1128 WP_214001977.1 efflux RND transporter periplasmic adaptor subunit -
  N5980_RS04080 (N5980_04080) - 846551..847195 (-) 645 WP_034170199.1 hypothetical protein -
  N5980_RS04085 (N5980_04085) pilG 847478..847861 (+) 384 WP_004784987.1 twitching motility response regulator PilG Regulator
  N5980_RS04090 (N5980_04090) - 847890..848258 (+) 369 WP_004784985.1 response regulator -
  N5980_RS04095 (N5980_04095) - 848264..848800 (+) 537 WP_004784984.1 chemotaxis protein CheW -
  N5980_RS04100 (N5980_04100) - 848847..850916 (+) 2070 WP_214001978.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14287.34 Da        Isoelectric Point: 4.7172

>NTDB_id=731246 N5980_RS04085 WP_004784987.1 847478..847861(+) (pilG) [Acinetobacter variabilis strain 2021CK-01005]
MDDKFQNLKVMVIDDSKTIRRTAETLLQREGYEVVTAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHISA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=731246 N5980_RS04085 WP_004784987.1 847478..847861(+) (pilG) [Acinetobacter variabilis strain 2021CK-01005]
ATGGACGATAAATTCCAAAATCTAAAAGTTATGGTCATTGATGACTCAAAGACCATTCGTCGTACAGCAGAAACTCTTCT
ACAGCGCGAAGGATATGAAGTCGTGACTGCGGTAGATGGTTTTGAAGCTTTATCAAAAATCGCAGAAGCCAATCCAGATA
TCGTATTTGTAGACATCATGATGCCTCGTCTAGATGGTTATCAAACTTGTGCGTTGATTAAAAACTCTCAAAATTATCAG
AATATTCCTGTGATTATGCTTTCGAGTAAAGATGGCTTATTTGATCAGGCCAAAGGTCGTGTTGTTGGTTCGGATGAATA
CTTGACTAAACCTTTCAGTAAAGATGAATTGCTTAATGCAATCCGTAACCATATTAGTGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9NVI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

95.276

100

0.953
  vicR Streptococcus mutans UA159

43.59

92.126

0.402
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37