Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GZN30_RS08770 Genome accession   NZ_AP019657
Coordinates   2013370..2014755 (-) Length   461 a.a.
NCBI ID   WP_075650093.1    Uniprot ID   -
Organism   Vibrio ponticus strain DSM 16217     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2008370..2019755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZN30_RS08730 - 2008430..2008846 (-) 417 WP_075650101.1 CBS domain-containing protein -
  GZN30_RS08735 moaE 2009048..2009503 (-) 456 WP_075650100.1 molybdopterin synthase catalytic subunit MoaE -
  GZN30_RS08740 moaD 2009505..2009750 (-) 246 WP_075650099.1 molybdopterin synthase sulfur carrier subunit -
  GZN30_RS08745 moaC 2009747..2010226 (-) 480 WP_075650098.1 cyclic pyranopterin monophosphate synthase MoaC -
  GZN30_RS08750 moaB 2010255..2010767 (-) 513 WP_075650097.1 molybdenum cofactor biosynthesis protein B -
  GZN30_RS08755 moaA 2010843..2011832 (-) 990 WP_075650096.1 GTP 3',8-cyclase MoaA -
  GZN30_RS08760 - 2012149..2013036 (+) 888 WP_075650095.1 YvcK family protein -
  GZN30_RS08765 luxU 2013022..2013360 (-) 339 WP_075650094.1 quorum-sensing phosphorelay protein LuxU -
  GZN30_RS08770 luxO 2013370..2014755 (-) 1386 WP_075650093.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GZN30_RS08775 uvrB 2015030..2017060 (-) 2031 WP_075650092.1 excinuclease ABC subunit UvrB -
  GZN30_RS08785 - 2017848..2019161 (-) 1314 WP_075650091.1 anaerobic C4-dicarboxylate transporter family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51464.89 Da        Isoelectric Point: 5.6986

>NTDB_id=73119 GZN30_RS08770 WP_075650093.1 2013370..2014755(-) (luxO) [Vibrio ponticus strain DSM 16217]
MQQNTFTQKNRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLSFRTPDLILLDLRLPDMTGMDVLHEVKQQN
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKTEDGINQGYQGFIGSSHTMQAVYRTID
SAAASKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGT
LFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERD
EDVIEIVYSLLGFMSKEEGKDFIRLSPEVVDCFSRYEWPGNVRQLQNVLRNVVVLNNGKEIRLDMLPPPLNKPIHGSEVS
ASQEKEVLTVHDIFPLWLTEKRAIEQAIQACDGNIPKAAGYLDVSPSTIYRKLQAWNEKQL

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=73119 GZN30_RS08770 WP_075650093.1 2013370..2014755(-) (luxO) [Vibrio ponticus strain DSM 16217]
ATGCAGCAAAATACGTTTACACAAAAAAATCGCTATCTTTTGATGGTAGAAGATACGGCTTCCGTTGCCGCCTTATACCG
CTCTTATCTCACGCCGCTCGGGATTGATATCAACATTGTTGGTACAGGTCGAGACGCTATTGAGAGTCTTTCTTTTCGTA
CCCCTGATCTGATCCTACTGGATTTACGTCTACCTGATATGACGGGTATGGACGTTCTCCATGAAGTAAAACAACAAAAC
CCAGATGTGCCCGTGATCTTTATGACGGCGCATGGCTCAATTGATACCGCAGTTGAGGCAATGCGACATGGTGCACAAGA
CTTCTTAATTAAGCCTTGTGAAGCAGACCGATTGCGCGTTACGGTCAATAATGCAATTCGTAAAGCAAGTAAGCTAAAAA
CTGAAGATGGAATAAATCAAGGTTATCAGGGTTTTATCGGCAGTAGTCATACGATGCAAGCGGTCTATCGCACCATAGAT
TCAGCGGCAGCAAGTAAGGCGAGTATTTTTATTACCGGTGAAAGTGGTACCGGTAAAGAAGTGTGTGCGGAAGCTATCCA
TGCGGCGAGTAAGCGTGGAGATAAGCCATTTATCGCGATTAACTGTGCCGCAATACCGAAAGACCTCATCGAAAGTGAGT
TGTTTGGTCACGTAAAAGGCGCGTTTACTGGCGCGGCGACAGACCGTCAAGGGGCAGCAGAACTTGCTGATGGTGGTACC
TTGTTCCTTGATGAATTGTGTGAAATGGACTTGGATTTGCAAACTAAACTACTGCGCTTTATTCAGACGGGTACTTTCCA
AAAGGTGGGTTCGTCAAAAATGAAGAGCGTGGATGTGCGTTTTGTTTGTGCGACGAACCGCGATCCGTGGAAAGAGGTGC
AAGAGGGACGTTTTCGCGAAGATTTGTATTATCGCTTGTATGTCATCCCACTTCATTTGCCACCTTTACGTGAGCGCGAC
GAAGATGTCATTGAAATTGTATACTCTTTGCTAGGTTTCATGTCGAAAGAAGAGGGCAAAGACTTCATCAGGCTGTCGCC
AGAGGTCGTTGATTGCTTCTCTCGTTATGAATGGCCAGGAAACGTACGTCAATTGCAAAACGTATTGCGTAACGTTGTGG
TGTTGAATAACGGCAAAGAAATTCGGTTAGATATGTTGCCACCGCCATTGAATAAGCCAATTCATGGCAGTGAGGTTAGT
GCCTCACAAGAGAAAGAAGTGCTAACTGTGCACGATATTTTTCCTTTGTGGTTGACGGAGAAGCGTGCCATTGAGCAAGC
CATTCAAGCTTGTGATGGCAATATTCCCAAAGCTGCAGGGTATTTAGACGTTAGCCCGTCGACAATTTATCGCAAGCTGC
AAGCCTGGAATGAAAAACAACTATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(146-311)

Bacterial regulatory protein, Fis family (HTH_8)

(416-456)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.801

96.963

0.842
  pilR Pseudomonas aeruginosa PAK

38.095

95.662

0.364

Multiple sequence alignment