Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GZK95_RS10655 Genome accession   NZ_AP019654
Coordinates   2363649..2365034 (-) Length   461 a.a.
NCBI ID   WP_075708497.1    Uniprot ID   A0A1Q9HK30
Organism   Vibrio panuliri strain JCM 19500     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2358649..2370034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS10620 moaE 2359259..2359714 (-) 456 WP_075715873.1 molybdopterin synthase catalytic subunit MoaE -
  GZK95_RS10625 moaD 2359716..2359961 (-) 246 WP_075708485.1 molybdopterin synthase sulfur carrier subunit -
  GZK95_RS10630 moaC 2359958..2360437 (-) 480 WP_075708487.1 cyclic pyranopterin monophosphate synthase MoaC -
  GZK95_RS10635 moaB 2360467..2360979 (-) 513 WP_075708489.1 molybdenum cofactor biosynthesis protein B -
  GZK95_RS10640 moaA 2361052..2362041 (-) 990 WP_075715872.1 GTP 3',8-cyclase MoaA -
  GZK95_RS10645 - 2362428..2363315 (+) 888 WP_075715871.1 YvcK family protein -
  GZK95_RS10650 luxU 2363301..2363639 (-) 339 WP_075708495.1 quorum-sensing phosphorelay protein LuxU -
  GZK95_RS10655 luxO 2363649..2365034 (-) 1386 WP_075708497.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GZK95_RS10660 uvrB 2365306..2367336 (-) 2031 WP_075708499.1 excinuclease ABC subunit UvrB -
  GZK95_RS10670 - 2368095..2369408 (-) 1314 WP_075708501.1 anaerobic C4-dicarboxylate transporter family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51497.08 Da        Isoelectric Point: 5.7504

>NTDB_id=73091 GZK95_RS10655 WP_075708497.1 2363649..2365034(-) (luxO) [Vibrio panuliri strain JCM 19500]
MQQNTPTQKNRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIDSLAFRTPDLILLDLRLPDMTGMDVLHEVKQQN
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKTEEGVNQGYQGFIGSSQTMQAVYRTID
SAAASKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGT
LFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQQGRFREDLYYRLYVIPLHLPPLRERG
EDVIEIAYSLLGFMSKEEGKDFIRLSPEVVDCFSRFEWPGNVRQLQNVLRNVVVLNNGKEIRLDMLPPPLNQPMYDNVIT
LQQEKEVLSVHEIFPLWLTEKRAIEQAIKACEGNIPKAAGYLDVSPSTIYRKLQAWNEKQL

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=73091 GZK95_RS10655 WP_075708497.1 2363649..2365034(-) (luxO) [Vibrio panuliri strain JCM 19500]
ATGCAACAAAATACCCCTACACAAAAAAATAGATACCTCTTGATGGTGGAGGATACGGCATCGGTTGCCGCTCTTTACCG
TTCTTATCTCACGCCTCTTGGCATTGATATCAATATTGTTGGTACGGGCCGTGACGCGATAGACAGTCTTGCTTTCCGTA
CTCCTGATCTTATCTTGTTGGATTTACGTCTGCCTGATATGACGGGTATGGATGTTCTGCACGAAGTGAAGCAGCAAAAC
CCCGATGTCCCGGTGATATTTATGACTGCACATGGGTCTATCGATACCGCCGTAGAGGCGATGCGGCATGGGGCACAGGA
CTTCTTAATTAAGCCTTGTGAGGCCGACCGACTGCGTGTCACCGTCAACAATGCGATTCGTAAGGCGAGCAAACTCAAGA
CAGAAGAAGGGGTCAATCAGGGCTATCAAGGTTTTATTGGCAGTAGTCAAACCATGCAGGCGGTTTATCGGACGATCGAC
TCCGCGGCGGCGAGTAAGGCGAGCATTTTTATCACGGGTGAGAGTGGTACGGGTAAAGAAGTGTGCGCTGAAGCGATACA
TGCTGCGAGTAAACGGGGCGACAAACCTTTTATTGCCATTAACTGTGCCGCCATCCCGAAAGATTTAATTGAAAGTGAGC
TATTTGGGCACGTGAAAGGGGCATTTACCGGCGCTGCAACCGATCGTCAAGGTGCGGCAGAACTTGCTGATGGTGGCACA
CTGTTTCTCGATGAGTTGTGTGAAATGGACTTGGATTTGCAAACCAAGTTATTGCGTTTTATCCAAACCGGTACCTTCCA
GAAGGTGGGTTCATCGAAGATGAAAAGCGTGGATGTGCGTTTTGTTTGTGCAACCAACCGTGATCCGTGGAAGGAAGTAC
AACAAGGGCGTTTTCGCGAAGACTTATACTATCGCTTGTATGTGATTCCTCTACATTTGCCGCCATTACGTGAACGGGGC
GAAGATGTCATTGAAATTGCATACTCTTTGCTTGGCTTTATGTCGAAAGAAGAGGGGAAAGACTTTATTAGGCTCTCTCC
TGAGGTGGTCGATTGCTTTTCTCGCTTCGAATGGCCGGGTAACGTTCGTCAGTTGCAAAACGTGCTGCGTAATGTGGTAG
TGCTGAACAATGGCAAAGAGATTCGTCTGGATATGTTACCACCGCCATTGAATCAACCGATGTATGACAACGTGATTACC
TTGCAGCAGGAGAAAGAAGTGCTGTCGGTTCACGAAATTTTTCCATTATGGTTAACCGAGAAACGTGCAATAGAGCAAGC
GATTAAAGCTTGTGAGGGGAATATCCCTAAAGCTGCGGGATACTTAGATGTCAGTCCGTCGACCATCTACCGCAAGCTAC
AAGCATGGAATGAGAAACAACTATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(146-311)

Bacterial regulatory protein, Fis family (HTH_8)

(416-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q9HK30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.025

96.963

0.844
  pilR Pseudomonas aeruginosa PAK

37.923

96.095

0.364

Multiple sequence alignment