Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GZK95_RS01210 Genome accession   NZ_AP019654
Coordinates   264030..264662 (-) Length   210 a.a.
NCBI ID   WP_005597159.1    Uniprot ID   A0A7W2ITN8
Organism   Vibrio panuliri strain JCM 19500     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 259030..269662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS01190 - 259117..260331 (+) 1215 WP_075716308.1 aspartate aminotransferase family protein -
  GZK95_RS01195 astA 260468..261493 (+) 1026 WP_075711245.1 arginine N-succinyltransferase -
  GZK95_RS01200 astD 261522..262979 (+) 1458 WP_075716309.1 succinylglutamate-semialdehyde dehydrogenase -
  GZK95_RS01205 - 263086..263877 (+) 792 WP_075716310.1 DUF1338 domain-containing protein -
  GZK95_RS01210 crp 264030..264662 (-) 633 WP_005597159.1 cAMP-activated global transcriptional regulator CRP Regulator
  GZK95_RS01215 - 264893..265762 (-) 870 WP_075711250.1 phosphoribulokinase -
  GZK95_RS01220 - 265923..266135 (-) 213 WP_075711252.1 YheU family protein -
  GZK95_RS01225 - 266201..267175 (-) 975 WP_075711254.1 hydrolase -
  GZK95_RS01230 - 267172..267657 (-) 486 WP_075711256.1 TIGR02444 family protein -
  GZK95_RS01235 - 267654..269576 (-) 1923 WP_075711258.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23681.48 Da        Isoelectric Point: 7.8388

>NTDB_id=73075 GZK95_RS01210 WP_005597159.1 264030..264662(-) (crp) [Vibrio panuliri strain JCM 19500]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=73075 GZK95_RS01210 WP_005597159.1 264030..264662(-) (crp) [Vibrio panuliri strain JCM 19500]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCATGCGGGCGAAAAAGCAGAAACGTTGTACTACATCGTTAAAGGCTCAGTTGCGGTTCTTATCAAGG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGATTTCATCGGGGAGCTTGGTCTATTTGAAGAAGAC
CAAGAGCGTACCGCTTGGGTTCGTGCTAAGTCTCCTTGTGAAGTGGCTGAAATTTCATTTAAGAAATTCCGTCAACTGAT
TCAAGTAAACCCAGACATTCTTATGCGTCTGTCTTCTCAGATGGCTCGTCGTCTACAAGTGACTAGCCAAAAAGTAGGTG
ACCTAGCATTCCTAGATGTAACTGGTCGTATCGCTCAAACGCTACTTAACCTAGCGAAGCAACCTGACGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGCCAAGAAATCGGTCAAATCGTGGGTTGCTCACGTGAAACCGTTGGTCGTAT
CTTGAAGATGCTTGAAGAGCAGAACCTAATCTCTGCTCACGGTAAGACTATCGTTGTGTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2ITN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment