Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GZK95_RS00515 Genome accession   NZ_AP019654
Coordinates   113202..113753 (+) Length   183 a.a.
NCBI ID   WP_225623938.1    Uniprot ID   -
Organism   Vibrio panuliri strain JCM 19500     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108202..118753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS00495 greB 108503..108979 (+) 477 WP_075714000.1 transcription elongation factor GreB -
  GZK95_RS00500 - 109157..111478 (+) 2322 WP_075713576.1 Tex family protein -
  GZK95_RS00505 - 111575..112045 (-) 471 WP_075710528.1 ATP-dependent Lon protease -
  GZK95_RS00510 bioH 112179..112970 (-) 792 WP_075713578.1 pimeloyl-ACP methyl ester esterase BioH -
  GZK95_RS00515 comF 113202..113753 (+) 552 WP_225623938.1 ComF family protein Machinery gene
  GZK95_RS00520 nfuA 113845..114432 (+) 588 WP_075710534.1 Fe-S biogenesis protein NfuA -
  GZK95_RS00525 nudE 114575..115123 (+) 549 WP_075710536.1 ADP compounds hydrolase NudE -
  GZK95_RS00530 cysQ 115149..115976 (+) 828 WP_075713582.1 3'(2'),5'-bisphosphate nucleotidase CysQ -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20854.28 Da        Isoelectric Point: 10.0432

>NTDB_id=73071 GZK95_RS00515 WP_225623938.1 113202..113753(+) (comF) [Vibrio panuliri strain JCM 19500]
MPSTIATDFCGECLASPPLWRRLYCVGDYAPPLSTYVKQLKFQQQLRQADMLAQLLSNQIALNVEVITYVPLHWRRQWWR
GFNQSEWLAKALAKRLNIPCIAMFKRVRATQTQRGMSRSQRQKNLKNAFQLSGLVNYSSVAIVDDVVTTGSTVRQLCKLL
LDAGAKSVDIYCICRTPDPVSER

Nucleotide


Download         Length: 552 bp        

>NTDB_id=73071 GZK95_RS00515 WP_225623938.1 113202..113753(+) (comF) [Vibrio panuliri strain JCM 19500]
ATGCCGTCGACAATAGCGACCGACTTTTGCGGCGAATGTTTAGCGTCGCCGCCACTTTGGCGCAGGCTTTATTGTGTGGG
TGATTACGCACCGCCGCTATCGACTTACGTAAAGCAATTGAAATTTCAACAGCAACTACGCCAAGCTGATATGTTGGCGC
AGTTGTTATCGAATCAGATTGCTTTGAATGTGGAAGTGATTACTTATGTGCCTTTGCATTGGCGCCGACAATGGTGGCGG
GGATTCAACCAAAGTGAATGGTTGGCTAAGGCATTGGCTAAGCGACTAAATATACCCTGCATTGCAATGTTTAAACGGGT
GAGAGCGACACAAACACAGCGAGGGATGAGCCGTTCTCAGCGTCAAAAAAATCTCAAAAATGCCTTCCAATTGAGTGGAT
TGGTGAACTACTCCAGTGTGGCAATTGTTGATGATGTGGTAACGACAGGCAGTACGGTGCGGCAATTGTGTAAATTATTG
CTTGATGCAGGAGCCAAAAGCGTTGATATTTATTGTATTTGCCGCACTCCTGATCCGGTTAGCGAACGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(88-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.111

98.361

0.552
  comF Vibrio campbellii strain DS40M4

54.444

98.361

0.536
  comF Haemophilus influenzae Rd KW20

40.556

98.361

0.399
  comF Haemophilus influenzae 86-028NP

40.556

98.361

0.399

Multiple sequence alignment