Detailed information NTG0730707

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: N5O87_RS07520
• Genome accession: NZ_CP104582
• Coordinates: 1567639..1569864 (+)
• Length: 741 a.a.
• NCBI ID: WP_279532607.1
• Uniprot ID: -
• Organism: Pseudomonas sp. GD03919
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1562639..1574864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5O87_RS07495 (N5O87_07495)	-	1562890..1563456 (-)	567	WP_012018144.1	PilZ domain-containing protein	-
N5O87_RS07500 (N5O87_07500)	-	1563753..1565000 (+)	1248	WP_012018145.1	lipoprotein-releasing ABC transporter permease subunit	-
N5O87_RS07505 (N5O87_07505)	lolD	1565020..1565706 (+)	687	WP_198134354.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
N5O87_RS07510 (N5O87_07510)	-	1565706..1566950 (+)	1245	WP_279532606.1	lipoprotein-releasing ABC transporter permease subunit	-
N5O87_RS07515 (N5O87_07515)	-	1566985..1567512 (-)	528	WP_147812237.1	DUF2062 domain-containing protein	-
N5O87_RS07520 (N5O87_07520)	comA	1567639..1569864 (+)	2226	WP_279532607.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
N5O87_RS07525 (N5O87_07525)	exbB	1569921..1570553 (+)	633	WP_039964821.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
N5O87_RS07530 (N5O87_07530)	-	1570550..1570978 (+)	429	WP_206409178.1	ExbD/TolR family protein	-
N5O87_RS07535 (N5O87_07535)	lpxK	1570979..1571980 (+)	1002	WP_279532608.1	tetraacyldisaccharide 4'-kinase	-
N5O87_RS07540 (N5O87_07540)	-	1572003..1572188 (+)	186	WP_003245207.1	Trm112 family protein	-
N5O87_RS07545 (N5O87_07545)	kdsB	1572189..1572953 (+)	765	WP_279532609.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
N5O87_RS07550 (N5O87_07550)	-	1572953..1573417 (+)	465	WP_279532610.1	low molecular weight protein-tyrosine-phosphatase	-
N5O87_RS07555 (N5O87_07555)	murB	1573414..1574433 (+)	1020	WP_279532611.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80361.48 Da
• Isoelectric Point: 10.0424

>NTDB_id=730707 N5O87_RS07520 WP_279532607.1 1567639..1569864(+) (comA) [Pseudomonas sp. GD03919]
MRTGMLALALGLLTLRFLPALPPGWLLAIAACAGLALLLSRLYPLGFFLLGLAWACSSAQSALDDRLAAQLDGRTLWLEG
RVVGLPEVSEGVVRFLLEEAHSRRAELPQRLRVAWYGGPTVQGGERWRLAVNLKRPHGLVNPQRFDYEAWLLAQRIGATG
TIKSGERLSSATGLGSWRDSLRQQLLAVPAFERQGAIAALVLGDGSGLSTTDWRLLQHTGTVHLMVISGQHIALLAGFLY
GLVALLAKLGAWPRRLPWLPCACALALSGALLYGFLAGFEVPVRRACVMVALVLLWRMRFRHLGAWWPLLLALIVVLLLE
PLASLQPGFWLSFSAVAILVLVFAGRLGLWGWWRGLTRAQWTMAIGLLPMMLILGLPVSSSGPLANLIAVPWVGMLVVPL
ALLGTLLLPVPWLGEGVLWLAGGALHLLFELLGAIAAWLPAWLPSNLPLWAWLLAAAGALLLLLPAGVPLRWPGIALLLP
ALFLPAPQLDDGRADIWVLDVGQGLAVLVRTREHALLYDAGPRFGDFDTGERIVLPSLRALNLRQLDVMLLSHADNDHAG
GAAAIKAGMPVSRVVSGEPQRLADALGAEACASGQSWQWNEVTFRLWQWQRAGSGNQLSCVLQIEAAGERLLLTGDIDVQ
AERALMQADLPLASQWLLAPHHGSRTSSSQAFIDAVAAQHVLITRSRHNAFGHPHPQVLARYRAAGVEVHDTALHGALHI
RLGQHGTARGLRSEPRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=730707 N5O87_RS07520 WP_279532607.1 1567639..1569864(+) (comA) [Pseudomonas sp. GD03919]
ATGCGAACAGGGATGTTGGCGCTGGCCCTGGGCTTGCTCACGCTGCGTTTTTTGCCGGCTTTGCCGCCAGGCTGGCTGTT
AGCGATTGCAGCCTGTGCCGGCCTGGCACTGTTGCTATCGCGCCTTTATCCGCTGGGTTTCTTTCTGCTCGGGCTGGCCT
GGGCGTGCAGTTCGGCGCAATCGGCGCTGGATGATCGCCTCGCTGCACAACTCGATGGTCGTACCCTATGGCTGGAGGGG
CGGGTGGTGGGCTTACCCGAAGTCTCCGAGGGTGTCGTGCGCTTTTTGCTGGAGGAGGCCCACTCGCGACGTGCCGAGTT
GCCGCAAAGGCTGCGCGTGGCCTGGTATGGCGGGCCGACGGTGCAAGGCGGCGAGCGCTGGCGGCTGGCGGTCAATCTCA
AGCGCCCGCACGGTCTTGTCAATCCGCAGCGTTTCGACTATGAGGCCTGGTTGTTGGCGCAGCGGATCGGCGCTACGGGT
ACGATCAAGTCAGGTGAGCGCCTGTCATCCGCGACAGGATTGGGCAGTTGGCGTGACAGCTTGCGTCAGCAATTGCTGGC
TGTGCCGGCCTTTGAGCGGCAGGGCGCCATTGCGGCGCTGGTTCTGGGCGATGGTTCGGGTCTGAGCACAACAGACTGGC
GCCTGCTTCAGCACACCGGAACGGTGCATCTGATGGTTATCTCGGGGCAGCACATCGCGCTGCTGGCCGGGTTTCTCTAT
GGCCTGGTGGCACTGCTGGCGAAGCTCGGTGCCTGGCCCAGGCGCCTGCCCTGGCTGCCCTGTGCTTGTGCCTTAGCCCT
GAGTGGAGCCTTGCTCTACGGTTTTCTGGCCGGTTTCGAGGTGCCGGTGCGCCGAGCCTGTGTGATGGTCGCGCTGGTGC
TGCTATGGCGTATGCGTTTTCGCCATCTGGGTGCCTGGTGGCCGCTGCTGCTGGCCTTGATCGTGGTTCTGCTGCTGGAA
CCACTGGCGTCCTTGCAGCCGGGGTTCTGGTTGTCGTTTTCGGCAGTGGCGATTCTGGTGCTGGTATTCGCTGGTCGTCT
CGGCCTCTGGGGGTGGTGGCGTGGCCTGACGCGCGCACAGTGGACCATGGCCATCGGCCTGTTGCCGATGATGTTGATCC
TCGGTCTGCCGGTGAGCAGTAGCGGGCCACTGGCCAATCTGATTGCCGTGCCCTGGGTCGGCATGCTGGTTGTGCCTCTG
GCGTTGTTGGGTACTTTGCTGTTGCCTGTCCCGTGGCTGGGTGAAGGTGTGCTGTGGCTGGCCGGTGGTGCATTGCACCT
GTTGTTCGAACTGCTCGGCGCCATTGCTGCCTGGCTACCGGCCTGGCTGCCCAGCAACCTGCCGCTGTGGGCCTGGCTAT
TGGCTGCGGCTGGCGCGTTGCTGCTTTTGCTGCCGGCTGGTGTGCCCTTGCGCTGGCCCGGCATCGCGCTGCTATTGCCG
GCATTGTTTCTGCCGGCGCCGCAGTTGGACGACGGGCGTGCCGACATCTGGGTGCTGGATGTCGGGCAGGGGCTGGCCGT
GCTGGTGCGCACCCGGGAGCACGCATTGCTTTACGATGCCGGGCCGCGTTTTGGCGATTTCGATACCGGTGAGCGTATTG
TCCTGCCCTCGTTGCGGGCGCTGAACCTCAGGCAGCTCGACGTGATGCTGCTCAGCCATGCCGATAACGATCATGCCGGT
GGTGCGGCCGCGATCAAGGCCGGGATGCCGGTATCGAGGGTTGTCAGCGGTGAGCCGCAAAGGCTGGCCGATGCCCTCGG
CGCCGAAGCGTGCGCGTCGGGGCAGAGCTGGCAATGGAACGAGGTGACCTTCAGGCTGTGGCAGTGGCAACGGGCCGGCT
CCGGTAACCAGTTGTCTTGTGTACTACAGATAGAGGCGGCGGGCGAACGCCTGCTGTTGACCGGCGATATCGACGTACAG
GCCGAGCGGGCGCTGATGCAGGCTGACTTGCCCCTGGCCTCGCAGTGGCTACTGGCTCCCCACCACGGCAGCCGCACGTC
ATCCAGCCAGGCGTTCATCGATGCCGTCGCAGCGCAGCATGTGCTGATCACCCGCAGTCGCCACAACGCCTTCGGCCATC
CTCACCCGCAGGTGCTTGCACGCTATCGTGCTGCGGGTGTCGAGGTACATGACACGGCGTTGCACGGCGCCCTGCATATT
CGCCTGGGGCAACATGGCACGGCGCGAGGGTTGCGAAGCGAGCCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-676)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (200-465)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	68.106	96.896	0.66
comA	Ralstonia pseudosolanacearum GMI1000	35.629	100	0.405