Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N5O87_RS07525 Genome accession   NZ_CP104582
Coordinates   1569921..1570553 (+) Length   210 a.a.
NCBI ID   WP_039964821.1    Uniprot ID   W6RDS6
Organism   Pseudomonas sp. GD03919     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564921..1575553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O87_RS07505 (N5O87_07505) lolD 1565020..1565706 (+) 687 WP_198134354.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  N5O87_RS07510 (N5O87_07510) - 1565706..1566950 (+) 1245 WP_279532606.1 lipoprotein-releasing ABC transporter permease subunit -
  N5O87_RS07515 (N5O87_07515) - 1566985..1567512 (-) 528 WP_147812237.1 DUF2062 domain-containing protein -
  N5O87_RS07520 (N5O87_07520) comA 1567639..1569864 (+) 2226 WP_279532607.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5O87_RS07525 (N5O87_07525) exbB 1569921..1570553 (+) 633 WP_039964821.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N5O87_RS07530 (N5O87_07530) - 1570550..1570978 (+) 429 WP_206409178.1 ExbD/TolR family protein -
  N5O87_RS07535 (N5O87_07535) lpxK 1570979..1571980 (+) 1002 WP_279532608.1 tetraacyldisaccharide 4'-kinase -
  N5O87_RS07540 (N5O87_07540) - 1572003..1572188 (+) 186 WP_003245207.1 Trm112 family protein -
  N5O87_RS07545 (N5O87_07545) kdsB 1572189..1572953 (+) 765 WP_279532609.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5O87_RS07550 (N5O87_07550) - 1572953..1573417 (+) 465 WP_279532610.1 low molecular weight protein-tyrosine-phosphatase -
  N5O87_RS07555 (N5O87_07555) murB 1573414..1574433 (+) 1020 WP_279532611.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22895.17 Da        Isoelectric Point: 8.5156

>NTDB_id=730708 N5O87_RS07525 WP_039964821.1 1569921..1570553(+) (exbB) [Pseudomonas sp. GD03919]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREHSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANASMLASGIAKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=730708 N5O87_RS07525 WP_039964821.1 1569921..1570553(+) (exbB) [Pseudomonas sp. GD03919]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGTATCGTCGC
TGAGCGCCTGTGGACCCTGCGGCCCGCCCGCGTCACCCCGGCCAATCTGCTGGCCCAGGTGTGGCGCTGGATCAAGGACA
AGAAACTCAACAACCAGAAGCTCAAGGAGCTGCGCGAGCATTCGCCGCTGGGGCAGATACTCGCTGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAAATCATGAAGGAGTGCATCGAGGAGGCTGCCGCGCGCGTCATCCACGAGCTGGAGCGTTATCT
CAATGCGCTCGGCACCATTGCCGGCATCGCGCCGCTGCTGGGCCTGCTTGGCACCGTGCTGGGCATGATTGAAATCTTCA
GCTCCTTCATGGGCTCGGGCATGGCTAACGCTTCCATGCTCGCCAGCGGTATCGCCAAGGCGCTGATCACCACGGCAGCC
GGCCTGATGGTGGCGATCCCAGCGCTGTTTTTCCACCGCTACCTGCAGCGCCGCGTCGACGAGTTGGTGGTGGGCATGGA
GCAGGAAGCGATCAAGTTGGTGGAGATGGTGCAGGGTGATCGCGATGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6RDS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.619

100

0.876