Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | GZI12_RS13050 | Genome accession | NZ_AP019651 |
| Coordinates | 2753482..2753997 (-) | Length | 171 a.a. |
| NCBI ID | WP_162047333.1 | Uniprot ID | - |
| Organism | Vibrio taketomensis strain C4III291 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2748482..2758997
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZI12_RS13035 | aroB | 2749884..2750972 (-) | 1089 | WP_162047330.1 | 3-dehydroquinate synthase | - |
| GZI12_RS13040 | aroK | 2751003..2751521 (-) | 519 | WP_162047331.1 | shikimate kinase AroK | - |
| GZI12_RS13045 | pilQ | 2751685..2753463 (-) | 1779 | WP_162047332.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GZI12_RS13050 | pilP | 2753482..2753997 (-) | 516 | WP_162047333.1 | pilus assembly protein PilP | Machinery gene |
| GZI12_RS13055 | pilO | 2753987..2754577 (-) | 591 | WP_162047334.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GZI12_RS13060 | pilN | 2754570..2755148 (-) | 579 | WP_162047335.1 | PilN domain-containing protein | Machinery gene |
| GZI12_RS13065 | pilM | 2755138..2755938 (-) | 801 | WP_332058805.1 | type IV pilus assembly protein PilM | - |
| GZI12_RS21055 | pilM | 2755947..2756129 (-) | 183 | WP_332058806.1 | hypothetical protein | Machinery gene |
| GZI12_RS13070 | - | 2756268..2758817 (+) | 2550 | WP_162047336.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18996.98 Da Isoelectric Point: 9.7297
>NTDB_id=73059 GZI12_RS13050 WP_162047333.1 2753482..2753997(-) (pilP) [Vibrio taketomensis strain C4III291]
MKAKWLCPSLLVILLVGCRANHDSLDDYIVQTKKTAQHEVKALTPVLEFVTSDYDAHANRSPFVLPQAALVLNQPQLRAD
CWQPKRRQKNGALERFPLEKLSLKGVMSRNGSNSALVQTPSGDLVKINAGQYIGLNNGKVVKVTESYMQIDETLPDGLGC
WSRRNVKLALN
MKAKWLCPSLLVILLVGCRANHDSLDDYIVQTKKTAQHEVKALTPVLEFVTSDYDAHANRSPFVLPQAALVLNQPQLRAD
CWQPKRRQKNGALERFPLEKLSLKGVMSRNGSNSALVQTPSGDLVKINAGQYIGLNNGKVVKVTESYMQIDETLPDGLGC
WSRRNVKLALN
Nucleotide
Download Length: 516 bp
>NTDB_id=73059 GZI12_RS13050 WP_162047333.1 2753482..2753997(-) (pilP) [Vibrio taketomensis strain C4III291]
ATGAAGGCTAAATGGTTGTGCCCAAGTTTACTCGTGATTTTGCTGGTTGGTTGTCGAGCCAACCATGACTCTCTTGATGA
TTATATCGTGCAAACAAAGAAAACTGCTCAACATGAAGTAAAGGCATTAACGCCGGTTCTCGAGTTTGTCACGTCGGATT
ATGACGCTCATGCTAATAGGTCACCGTTTGTTTTACCTCAAGCGGCATTGGTGCTCAATCAACCTCAATTAAGGGCTGAT
TGCTGGCAACCGAAACGTCGTCAGAAAAATGGTGCATTGGAGCGTTTCCCACTAGAAAAATTAAGTCTTAAAGGCGTAAT
GAGCCGCAACGGCAGTAACTCGGCGTTAGTCCAAACGCCAAGCGGAGACTTGGTGAAAATCAACGCTGGACAATACATTG
GTTTAAATAATGGCAAGGTTGTCAAAGTCACCGAGTCTTACATGCAAATCGATGAAACATTGCCGGATGGTTTGGGTTGC
TGGAGCCGTCGCAACGTCAAATTAGCCCTGAATTAA
ATGAAGGCTAAATGGTTGTGCCCAAGTTTACTCGTGATTTTGCTGGTTGGTTGTCGAGCCAACCATGACTCTCTTGATGA
TTATATCGTGCAAACAAAGAAAACTGCTCAACATGAAGTAAAGGCATTAACGCCGGTTCTCGAGTTTGTCACGTCGGATT
ATGACGCTCATGCTAATAGGTCACCGTTTGTTTTACCTCAAGCGGCATTGGTGCTCAATCAACCTCAATTAAGGGCTGAT
TGCTGGCAACCGAAACGTCGTCAGAAAAATGGTGCATTGGAGCGTTTCCCACTAGAAAAATTAAGTCTTAAAGGCGTAAT
GAGCCGCAACGGCAGTAACTCGGCGTTAGTCCAAACGCCAAGCGGAGACTTGGTGAAAATCAACGCTGGACAATACATTG
GTTTAAATAATGGCAAGGTTGTCAAAGTCACCGAGTCTTACATGCAAATCGATGAAACATTGCCGGATGGTTTGGGTTGC
TGGAGCCGTCGCAACGTCAAATTAGCCCTGAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
61.446 |
97.076 |
0.596 |
| pilP | Vibrio campbellii strain DS40M4 |
50 |
99.415 |
0.497 |