Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GZI12_RS12980 Genome accession   NZ_AP019651
Coordinates   2738000..2738632 (+) Length   210 a.a.
NCBI ID   WP_005597159.1    Uniprot ID   A0A7W2ITN8
Organism   Vibrio taketomensis strain C4III291     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2733000..2743632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZI12_RS12960 - 2734903..2735391 (+) 489 WP_162047319.1 TIGR02444 family protein -
  GZI12_RS12965 - 2735388..2736362 (+) 975 WP_162047320.1 hydrolase -
  GZI12_RS12970 - 2736429..2736641 (+) 213 WP_162047321.1 YheU family protein -
  GZI12_RS12975 - 2736780..2737647 (+) 868 Protein_2491 phosphoribulokinase -
  GZI12_RS12980 crp 2738000..2738632 (+) 633 WP_005597159.1 cAMP-activated global transcriptional regulator CRP Regulator
  GZI12_RS12985 - 2738692..2739483 (-) 792 WP_162047618.1 DUF1338 domain-containing protein -
  GZI12_RS12990 astD 2739621..2741081 (-) 1461 WP_162047322.1 succinylglutamate-semialdehyde dehydrogenase -
  GZI12_RS12995 astA 2741116..2742135 (-) 1020 WP_162047323.1 arginine N-succinyltransferase -
  GZI12_RS13000 - 2742265..2743479 (-) 1215 WP_162047324.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23681.48 Da        Isoelectric Point: 7.8388

>NTDB_id=73057 GZI12_RS12980 WP_005597159.1 2738000..2738632(+) (crp) [Vibrio taketomensis strain C4III291]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=73057 GZI12_RS12980 WP_005597159.1 2738000..2738632(+) (crp) [Vibrio taketomensis strain C4III291]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCGTCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCTGAAACGTTGTACTACATCGTTAAAGGCTCTGTTGCGGTACTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGATTTCATCGGTGAGCTTGGTCTATTTGAAGAAGAT
CAAGAGCGTACCGCTTGGGTTCGTGCTAAATCTCCTTGTGAGGTTGCTGAAATTTCATTCAAGAAATTCCGTCAGCTGAT
TCAAGTTAATCCAGACATCCTAATGCGCCTGTCTTCGCAAATGGCTCGTCGTCTACAAGTGACTAGCCAAAAAGTGGGTG
ACCTAGCATTCCTAGATGTAACTGGTCGTATTGCACAAACGCTACTAAACCTAGCGAAACAACCTGATGCGATGACGCAC
CCTGACGGTATGCAAATCAAGATCACTCGCCAAGAAATCGGCCAAATCGTTGGCTGTTCTCGCGAAACCGTAGGTCGCAT
TCTGAAGATGCTTGAAGAGCAAAACCTAATTTCTGCTCACGGTAAAACGATCGTTGTGTACGGAACTCGCTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2ITN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment