Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N5C08_RS07675 Genome accession   NZ_CP104557
Coordinates   1635058..1635693 (+) Length   211 a.a.
NCBI ID   WP_060478211.1    Uniprot ID   -
Organism   Pseudomonas promysalinigenes strain RL-WG26     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630058..1640693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5C08_RS07655 (N5C08_07655) - 1630292..1631224 (+) 933 WP_060478265.1 ABC transporter ATP-binding protein -
  N5C08_RS07660 (N5C08_07660) - 1631221..1632000 (+) 780 WP_060478209.1 ABC transporter permease -
  N5C08_RS07665 (N5C08_07665) - 1631884..1632510 (-) 627 WP_155500265.1 DUF2062 domain-containing protein -
  N5C08_RS07670 (N5C08_07670) comA 1632653..1634860 (+) 2208 WP_261745093.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5C08_RS07675 (N5C08_07675) exbB 1635058..1635693 (+) 636 WP_060478211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N5C08_RS07680 (N5C08_07680) - 1635690..1636124 (+) 435 WP_186476658.1 ExbD/TolR family protein -
  N5C08_RS07685 (N5C08_07685) lpxK 1636124..1637125 (+) 1002 WP_060478213.1 tetraacyldisaccharide 4'-kinase -
  N5C08_RS07690 (N5C08_07690) - 1637179..1637364 (+) 186 WP_003247142.1 Trm112 family protein -
  N5C08_RS07695 (N5C08_07695) kdsB 1637361..1638125 (+) 765 WP_261745094.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5C08_RS07700 (N5C08_07700) - 1638125..1638589 (+) 465 WP_261745095.1 low molecular weight protein-tyrosine-phosphatase -
  N5C08_RS07705 (N5C08_07705) murB 1638586..1639605 (+) 1020 WP_261745096.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22831.12 Da        Isoelectric Point: 7.3616

>NTDB_id=730474 N5C08_RS07675 WP_060478211.1 1635058..1635693(+) (exbB) [Pseudomonas promysalinigenes strain RL-WG26]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVVQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=730474 N5C08_RS07675 WP_060478211.1 1635058..1635693(+) (exbB) [Pseudomonas promysalinigenes strain RL-WG26]
GTGTGGGAATTGGTCAAGTCTGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATTGCCGCCATGGCGATCGTCGT
CGAACGTCTGTGGACTCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCGCCACTGGGCGAGATCCTCGCGGCAGGCCTTGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGAGTCATTCACGAACTCGAGCGCTACAT
CAGTACCCTCGGCACCATTGCCGCCATGGCGCCACTGCTTGGCCTGCTGGGCACCGTGTTGGGCATGATCGACATCTTCA
GCGCTTTCATGGGCTCGCAAATGACCGCAAACGCCGCTGTGCTGGCCGGGGGGATCTCCAAGGCTCTGGTTACTACCGCA
GCCGGCCTGATGGTGGGGATCCCGGCGGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTAGTGGGCAT
GGAGCAAGAAGCGATCAAACTGGTGGAGGTGGTCCAGGGCGACCGGGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834