Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N5C08_RS07670 Genome accession   NZ_CP104557
Coordinates   1632653..1634860 (+) Length   735 a.a.
NCBI ID   WP_261745093.1    Uniprot ID   -
Organism   Pseudomonas promysalinigenes strain RL-WG26     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1627653..1639860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5C08_RS07650 (N5C08_07650) - 1629536..1630159 (+) 624 WP_261745092.1 glutathione S-transferase -
  N5C08_RS07655 (N5C08_07655) - 1630292..1631224 (+) 933 WP_060478265.1 ABC transporter ATP-binding protein -
  N5C08_RS07660 (N5C08_07660) - 1631221..1632000 (+) 780 WP_060478209.1 ABC transporter permease -
  N5C08_RS07665 (N5C08_07665) - 1631884..1632510 (-) 627 WP_155500265.1 DUF2062 domain-containing protein -
  N5C08_RS07670 (N5C08_07670) comA 1632653..1634860 (+) 2208 WP_261745093.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5C08_RS07675 (N5C08_07675) exbB 1635058..1635693 (+) 636 WP_060478211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N5C08_RS07680 (N5C08_07680) - 1635690..1636124 (+) 435 WP_186476658.1 ExbD/TolR family protein -
  N5C08_RS07685 (N5C08_07685) lpxK 1636124..1637125 (+) 1002 WP_060478213.1 tetraacyldisaccharide 4'-kinase -
  N5C08_RS07690 (N5C08_07690) - 1637179..1637364 (+) 186 WP_003247142.1 Trm112 family protein -
  N5C08_RS07695 (N5C08_07695) kdsB 1637361..1638125 (+) 765 WP_261745094.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5C08_RS07700 (N5C08_07700) - 1638125..1638589 (+) 465 WP_261745095.1 low molecular weight protein-tyrosine-phosphatase -
  N5C08_RS07705 (N5C08_07705) murB 1638586..1639605 (+) 1020 WP_261745096.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79333.24 Da        Isoelectric Point: 10.1615

>NTDB_id=730473 N5C08_RS07670 WP_261745093.1 1632653..1634860(+) (comA) [Pseudomonas promysalinigenes strain RL-WG26]
MRTGMFALALGLLCLGFIPVMPSVGWLLLLVLAGACCLPTRLWPLGCFALGSAWACWSAQLALNDRLEAGLDGRTLWLEG
RVVGLPTRTAQGVRFELQQAHSRRAELPQRLQLSWFDGPSIRAGESWRVAATLQRPAGLLNPHGPDRVAQLLARRIGAVG
TVKAGELTRAVAPDWRDALRERLLRVDAHGQQAGLAALVLGDGAGLAREQWQALQATGTVHLLVISGQHIGLVAGMLYAL
VASLARWGLWPRSWPWLPWACGLALVAALTYGWLAGAGVPVQRACLMLAVVLLWRLRFRQLGALLPLLLALTVVLLVDPL
AALLPGFWLSFAAVAILIYSFAGRLGNWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLTAPIANLLAVPWVSVAVLPPAL
LGTLLLPVPGVGEGLLWLAGAALHLLFALLAWVAAWQPAWVPPALPIGPWLLVCLGALLLLLPGGVPLRSLGAVMLLALW
APKPPVPHGQVEVWQLDVGQGLAVLLRTRHHTLLYDAGPARGDFDLGERVVLPTLRKLGVAGLDLMLISHAHADHAGGAV
AIIKGLPVARVIGGEALEEVPVQPCASSERWSWDGVHFSLWRWESGQSSNDRSCVLLVEAQGERLLLAGDIEAGAERAWL
NAHEAPRIDWLQAPHHGSRSSSTEAFIRATTPRGVLISRGRNNSFGHPHAQVVERYRRYGMVMHDTAVEGALRLVLGAQG
EVESVGRQRRFWRVQ

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=730473 N5C08_RS07670 WP_261745093.1 1632653..1634860(+) (comA) [Pseudomonas promysalinigenes strain RL-WG26]
ATGCGCACAGGGATGTTTGCGCTCGCCCTCGGGCTGTTATGCCTGGGCTTTATCCCGGTAATGCCATCGGTCGGTTGGCT
GTTGTTGCTAGTGCTGGCAGGGGCTTGTTGCCTGCCCACGCGGCTCTGGCCGCTGGGCTGCTTCGCGCTGGGATCAGCCT
GGGCCTGCTGGTCGGCACAGCTGGCATTGAATGACCGGCTAGAGGCTGGTTTGGACGGCCGTACGCTGTGGTTGGAGGGG
CGGGTGGTTGGCTTGCCCACGCGCACTGCGCAGGGCGTGCGTTTTGAGCTGCAACAGGCGCATTCGCGCCGCGCTGAACT
ACCGCAGCGTCTGCAATTGAGCTGGTTCGATGGCCCATCCATTCGTGCTGGCGAGTCTTGGCGTGTGGCGGCGACCTTGC
AGCGCCCGGCAGGTCTGCTTAACCCCCATGGCCCAGATCGAGTGGCGCAGTTGCTGGCTCGGCGTATCGGTGCCGTAGGC
ACGGTCAAAGCCGGTGAGCTTACCCGCGCGGTGGCCCCCGATTGGCGCGACGCGCTACGTGAGCGGCTACTGAGGGTCGA
CGCCCATGGGCAGCAAGCGGGCTTGGCAGCCTTGGTGCTCGGTGACGGCGCGGGCCTTGCCCGGGAACAGTGGCAGGCGC
TGCAGGCAACTGGCACGGTGCATCTACTGGTGATTTCTGGGCAACACATTGGCTTGGTCGCCGGCATGCTCTATGCCTTG
GTGGCAAGCCTGGCACGCTGGGGCCTGTGGCCGCGCAGTTGGCCATGGTTACCCTGGGCATGCGGCTTGGCGCTGGTGGC
AGCGCTGACCTACGGCTGGCTGGCCGGCGCCGGCGTGCCGGTGCAGCGCGCCTGTCTGATGTTGGCAGTTGTGCTGTTAT
GGCGATTGCGGTTTCGGCAGCTGGGGGCACTGTTGCCGTTGCTGCTGGCATTGACCGTGGTATTGCTGGTCGACCCCTTG
GCTGCGTTATTGCCAGGGTTCTGGCTGTCGTTCGCGGCGGTGGCGATCCTCATCTACAGCTTCGCTGGCCGGCTTGGCAA
CTGGCGCCCCTGGCAGGCCTGGACCCGGGCGCAGTGGGTGATTGCCGTCGGTTTACTGCCGGTATTGTTGGCCACAGGGT
TGCCGGTGAGTCTGACTGCGCCGATAGCGAACCTGCTGGCGGTGCCATGGGTGAGCGTGGCGGTGTTGCCCCCGGCATTG
CTTGGGACCTTGTTGTTGCCAGTGCCGGGGGTAGGGGAGGGTTTGCTATGGCTTGCGGGCGCGGCGCTGCACCTGCTGTT
CGCCCTGCTTGCGTGGGTGGCCGCATGGCAACCGGCATGGGTGCCGCCAGCGCTACCGATAGGGCCCTGGTTGCTGGTGT
GCCTAGGGGCGCTGCTGCTATTGCTGCCTGGCGGCGTGCCGCTGCGCAGCCTGGGCGCGGTCATGTTACTGGCCTTGTGG
GCACCAAAGCCGCCTGTGCCCCATGGGCAGGTCGAGGTCTGGCAGCTCGATGTCGGCCAAGGCCTTGCGGTTTTGCTGCG
TACTCGACATCACACGTTGCTATACGACGCAGGGCCTGCCAGAGGCGATTTCGACCTGGGGGAACGAGTAGTGCTGCCCA
CCCTGCGTAAATTGGGTGTGGCGGGCTTGGACCTGATGCTGATAAGTCACGCGCATGCGGACCACGCCGGTGGCGCTGTG
GCCATCATCAAAGGCTTGCCGGTGGCTCGCGTGATAGGTGGCGAAGCGCTGGAAGAGGTCCCCGTGCAGCCTTGTGCGTC
CAGTGAACGGTGGAGTTGGGACGGCGTGCATTTTTCGCTGTGGCGCTGGGAAAGCGGGCAAAGCAGCAATGATCGTTCCT
GCGTGCTACTGGTCGAGGCGCAAGGTGAGCGTTTGCTGTTGGCCGGCGATATCGAGGCAGGCGCCGAACGCGCCTGGCTC
AATGCCCATGAAGCGCCACGTATCGACTGGCTTCAGGCCCCGCACCATGGCAGCCGCAGTTCATCCACCGAGGCGTTCAT
CCGTGCCACTACGCCGCGTGGGGTGTTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCCCACGCACAAGTGGTCG
AGCGGTATCGGCGCTATGGGATGGTGATGCATGACACTGCTGTGGAGGGTGCGTTGCGGCTGGTGCTCGGTGCGCAGGGT
GAGGTCGAAAGTGTGGGGCGCCAGCGAAGGTTTTGGCGAGTGCAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(24-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-675)

Competence protein (Competence)

(198-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.252

98.095

0.571
  comA Ralstonia pseudosolanacearum GMI1000

33.873

100

0.37