Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   N5E84_RS04060 Genome accession   NZ_CP104554
Coordinates   833491..835734 (+) Length   747 a.a.
NCBI ID   WP_029388196.1    Uniprot ID   A0A289GD16
Organism   Vibrio sp. J502     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 828491..840734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS04035 (N5E84_04035) - 828969..829538 (-) 570 WP_019282061.1 hypothetical protein -
  N5E84_RS04040 (N5E84_04040) lolC 829704..830912 (+) 1209 WP_019282060.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  N5E84_RS04045 (N5E84_04045) lolD 830905..831591 (+) 687 WP_019282059.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  N5E84_RS04050 (N5E84_04050) lolE 831592..832836 (+) 1245 WP_019282058.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  N5E84_RS04055 (N5E84_04055) - 832975..833484 (-) 510 WP_010319231.1 DUF2062 domain-containing protein -
  N5E84_RS04060 (N5E84_04060) comEC 833491..835734 (+) 2244 WP_029388196.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5E84_RS04065 (N5E84_04065) msbA 835767..837515 (+) 1749 WP_019282056.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  N5E84_RS04070 (N5E84_04070) lpxK 837519..838526 (+) 1008 WP_019282055.1 tetraacyldisaccharide 4'-kinase -
  N5E84_RS04075 (N5E84_04075) - 838507..838686 (+) 180 WP_013856535.1 Trm112 family protein -
  N5E84_RS04080 (N5E84_04080) kdsB 838686..839444 (+) 759 WP_019282054.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83316.09 Da        Isoelectric Point: 9.4493

>NTDB_id=730424 N5E84_RS04060 WP_029388196.1 833491..835734(+) (comEC) [Vibrio sp. J502]
MTLLSNYWTLASFSLTAISASYWPWMPDWKWSMPLFAILILSVGYRKLRFLSGVTMALVVILISGNLLREQSNTIFQTGS
DITINGQVNSFFRQISHGYEGTISIRSINGQTLGIFLRPKVRLIAPLPLKYGDVAEFSITVKPIFGRLNETGFDAEAYSL
SQGIVARATVNNGQSYRIESSPEWRAQCYQKIKTWLADDPNLGILMALTFGERSDISTAQWQALRDSGLIHLVAISGLHI
GIAFGFGYSLGLVLMRLHHRMGWSPFVVGSLCALGYAWLAGFTLPTQRALIMCLLNVAMIVLNVRINTLQRLLMTLSAVL
LIDPFAALSSSFWMSFIAVSVVFYQLSLPQTQRFFLWRLLTMQIGLVLCMLPVTAYFFGGVSTSAALYNLVFIPWFSFVV
VPAIFVALGCTVLTFDGAPMVWHWVAKLLIPVDWSIHYSSLSWFPISGAVLVLLSSALLLFVFSPLISRFALAVYSLIVM
VSWLTIPVKTGWRIDVLDVGHGLAVLIEKEGRYVLYDTGASWQGGDHIQATVAPVLNKRGATQLDGLILSHLDNDHAGGR
AEVERVWQPKWKRASQTIAGYQPCIAGEQWQWQQLSFDVIWPPKTVARAYNPHSCVIRIFDSNTGFSVLLPGDVDAMSEW
LLARTEQSLQSHILLVPHHGSRTSSTVALIRKVNPEVAIASLAKGGRWQLPSAQVVQRYQQHGANWLDTGEAGQISVIFG
MQNYQVSSLRISRSQPWYRQMLRNEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=730424 N5E84_RS04060 WP_029388196.1 833491..835734(+) (comEC) [Vibrio sp. J502]
ATGACTCTCTTATCTAATTACTGGACCCTAGCTTCGTTTTCGCTAACCGCCATTTCTGCTTCTTATTGGCCTTGGATGCC
AGATTGGAAATGGAGTATGCCTCTATTCGCCATTCTTATACTCTCTGTCGGTTATAGAAAACTGCGCTTTCTCTCAGGAG
TAACAATGGCTTTAGTGGTCATTTTGATCAGCGGGAACTTATTACGTGAGCAGTCCAACACTATTTTTCAGACAGGTTCG
GATATTACCATAAACGGACAGGTTAACAGCTTTTTTAGACAAATTAGTCATGGTTATGAAGGAACAATTTCGATTCGATC
AATCAATGGTCAAACCTTAGGCATTTTTTTGCGGCCCAAGGTGCGATTAATTGCTCCTTTGCCGTTGAAGTATGGTGACG
TGGCTGAATTCTCCATCACAGTAAAACCTATCTTTGGTCGGTTAAATGAGACCGGGTTTGATGCAGAGGCGTACTCTTTG
AGCCAAGGTATTGTGGCTCGTGCAACGGTTAATAATGGACAGTCTTATCGCATTGAATCATCACCAGAATGGCGAGCACA
ATGCTACCAGAAGATCAAAACCTGGCTCGCTGATGATCCCAATCTTGGTATTTTAATGGCGCTTACGTTTGGTGAGCGCA
GTGATATTTCAACGGCACAGTGGCAAGCATTACGAGACAGTGGGCTGATTCATTTGGTTGCCATTTCTGGTCTGCACATT
GGCATCGCGTTTGGTTTTGGTTATAGCCTTGGGCTCGTATTGATGCGTTTACATCATCGTATGGGGTGGTCGCCATTCGT
CGTAGGAAGCTTGTGCGCACTAGGCTATGCTTGGTTGGCTGGCTTTACCTTGCCCACTCAACGCGCACTGATCATGTGTT
TGCTTAATGTGGCGATGATTGTCCTCAATGTCCGTATCAATACGTTGCAGCGACTGCTTATGACGTTATCGGCGGTGCTG
CTCATCGATCCTTTTGCTGCGTTATCCAGTAGCTTTTGGATGTCCTTTATTGCTGTCTCAGTGGTGTTCTACCAACTTTC
TCTACCTCAAACTCAGCGATTTTTTTTATGGCGTTTATTGACGATGCAGATTGGGTTAGTGCTGTGTATGCTTCCGGTAA
CTGCTTATTTTTTCGGTGGAGTCAGTACCAGTGCGGCGCTCTATAACTTAGTGTTTATTCCTTGGTTCAGTTTTGTGGTG
GTTCCGGCGATCTTTGTTGCTTTAGGGTGTACGGTTTTGACTTTTGATGGCGCACCTATGGTGTGGCATTGGGTGGCTAA
ATTACTCATTCCCGTTGATTGGTCAATTCATTATTCAAGCCTCAGTTGGTTTCCTATTTCTGGAGCTGTTTTGGTTCTGT
TGAGCAGTGCTCTGTTGCTGTTTGTGTTTTCACCGTTGATCTCGCGTTTTGCACTTGCGGTTTACAGCCTAATTGTGATG
GTTTCTTGGCTCACCATTCCGGTAAAAACGGGTTGGCGGATTGATGTGTTAGATGTTGGGCATGGGTTGGCGGTGTTGAT
CGAAAAAGAAGGACGCTACGTGCTTTATGATACTGGTGCAAGTTGGCAAGGTGGTGATCACATCCAAGCAACAGTTGCCC
CCGTGTTAAACAAACGGGGAGCTACGCAATTAGACGGGTTGATTTTGAGTCACTTGGATAACGACCATGCAGGTGGAAGA
GCGGAAGTTGAGCGTGTTTGGCAGCCCAAATGGAAACGTGCTAGTCAAACGATAGCGGGTTACCAACCTTGTATTGCTGG
CGAACAATGGCAGTGGCAACAACTCTCTTTTGACGTTATCTGGCCACCTAAAACTGTAGCGCGGGCTTACAATCCTCACT
CTTGCGTGATTCGAATCTTTGACTCAAATACCGGTTTTTCAGTGCTTTTACCCGGGGATGTGGATGCAATGAGTGAGTGG
TTACTTGCGCGAACAGAGCAATCCTTACAAAGTCATATCCTGCTTGTACCACACCACGGTAGTAGGACATCTTCTACTGT
TGCTTTGATTCGTAAGGTGAATCCTGAGGTCGCTATTGCCTCGCTCGCCAAAGGCGGACGCTGGCAATTACCTTCCGCAC
AGGTTGTTCAACGCTACCAACAACATGGAGCAAACTGGTTGGATACGGGTGAAGCAGGGCAAATTAGCGTTATTTTTGGC
ATGCAGAATTATCAAGTTAGCAGCTTGCGTATCTCTCGCTCTCAGCCTTGGTATAGGCAGATGCTCCGTAACGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-681)

Competence protein (Competence)

(208-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A289GD16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

52.139

100

0.522
  comEC Vibrio parahaemolyticus RIMD 2210633

43.989

100

0.446
  comEC Vibrio campbellii strain DS40M4

43.841

100

0.443