Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   Vt282_RS01120 Genome accession   NZ_AP019649
Coordinates   240178..240810 (-) Length   210 a.a.
NCBI ID   WP_005597159.1    Uniprot ID   A0A7W2ITN8
Organism   Vibrio taketomensis strain C4III282     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 235178..245810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vt282_RS01100 - 235336..236550 (+) 1215 WP_162062352.1 aspartate aminotransferase family protein -
  Vt282_RS01105 astA 236680..237699 (+) 1020 WP_162062353.1 arginine N-succinyltransferase -
  Vt282_RS01110 astD 237734..239194 (+) 1461 WP_162062354.1 succinylglutamate-semialdehyde dehydrogenase -
  Vt282_RS01115 - 239332..240123 (+) 792 WP_162063657.1 DUF1338 domain-containing protein -
  Vt282_RS01120 crp 240178..240810 (-) 633 WP_005597159.1 cAMP-activated global transcriptional regulator CRP Regulator
  Vt282_RS01125 - 241163..242032 (-) 870 WP_162062355.1 phosphoribulokinase -
  Vt282_RS01130 - 242170..242382 (-) 213 WP_162047321.1 YheU family protein -
  Vt282_RS01135 - 242449..243423 (-) 975 WP_162062356.1 hydrolase -
  Vt282_RS01140 - 243420..243908 (-) 489 WP_162062357.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23681.48 Da        Isoelectric Point: 7.8388

>NTDB_id=72998 Vt282_RS01120 WP_005597159.1 240178..240810(-) (crp) [Vibrio taketomensis strain C4III282]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=72998 Vt282_RS01120 WP_005597159.1 240178..240810(-) (crp) [Vibrio taketomensis strain C4III282]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCGTCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCTGAAACGTTGTACTACATCGTTAAAGGCTCTGTTGCGGTACTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGATTTCATCGGTGAGCTTGGTCTATTTGAAGAAGAT
CAAGAGCGTACCGCTTGGGTTCGTGCTAAATCTCCTTGTGAGGTTGCTGAAATTTCATTCAAGAAATTCCGTCAGCTGAT
TCAAGTTAATCCAGACATCCTAATGCGCCTGTCTTCGCAAATGGCTCGTCGTCTACAAGTGACTAGCCAAAAAGTGGGTG
ACCTAGCATTCCTAGATGTAACTGGTCGTATTGCACAAACGCTACTAAACCTAGCGAAACAACCTGATGCGATGACGCAC
CCTGACGGTATGCAAATCAAGATCACTCGCCAAGAAATCGGCCAAATCGTTGGCTGTTCTCGCGAAACCGTAGGTCGCAT
TCTGAAAATGCTTGAAGAGCAAAACCTAATTTCTGCTCACGGTAAAACGATCGTTGTGTACGGAACTCGCTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2ITN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment