Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N4P55_RS16865 Genome accession   NZ_CP104408
Coordinates   3715761..3717986 (-) Length   741 a.a.
NCBI ID   WP_262665130.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain Ant01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3710761..3722986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P55_RS16830 (N4P55_16845) murB 3711131..3712150 (-) 1020 WP_262665126.1 UDP-N-acetylmuramate dehydrogenase -
  N4P55_RS16835 (N4P55_16850) - 3712147..3712611 (-) 465 WP_262665127.1 low molecular weight protein-tyrosine-phosphatase -
  N4P55_RS16840 (N4P55_16855) kdsB 3712611..3713375 (-) 765 WP_064452864.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N4P55_RS16845 (N4P55_16860) - 3713372..3713557 (-) 186 WP_003174668.1 Trm112 family protein -
  N4P55_RS16850 (N4P55_16865) lpxK 3713581..3714591 (-) 1011 WP_262665128.1 tetraacyldisaccharide 4'-kinase -
  N4P55_RS16855 (N4P55_16870) - 3714591..3715019 (-) 429 WP_262665129.1 ExbD/TolR family protein -
  N4P55_RS16860 (N4P55_16875) exbB 3715016..3715651 (-) 636 WP_064452867.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N4P55_RS16865 (N4P55_16880) comA 3715761..3717986 (-) 2226 WP_262665130.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N4P55_RS16870 (N4P55_16885) - 3718122..3718643 (+) 522 WP_053256801.1 DUF2062 domain-containing protein -
  N4P55_RS16875 (N4P55_16890) - 3718640..3719998 (-) 1359 WP_262668031.1 sensor histidine kinase -
  N4P55_RS16880 (N4P55_16895) - 3719985..3720713 (-) 729 WP_262668032.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80136.99 Da        Isoelectric Point: 10.9807

>NTDB_id=729674 N4P55_RS16865 WP_262665130.1 3715761..3717986(-) (comA) [Pseudomonas fluorescens strain Ant01]
MRTGMFALGLGLLALRFLPALPPTAWLLAMLVLALMLLPFRTYPLAFFLLGLSWACISAQWALNDRLKPALDGQTRWVEG
RVIGLPQQTSSGVRFELADGRSRNARLPKRIRVSWQGGPPVNSGERWRLALTLKRPSGLLNFHGFDYEAWLLAQRIGATG
SVKDGQRLAPARNAWRDSVRQRLKTVDAQGREAGLAALVLGDGSGLATEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGCWPRALPWLPWACGLGFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALDGVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWRIWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTLLLAVPLVGEGLLWLAGGALDGLFRGLTLLAGLRSAWVPAEVPVGYWLLSAVGAVLLLLPKGVPFRLLGWPLLMLAI
FPPRALVPHGQVEVLQLDVGQGQAVILRTRNHAMLYDAGPRSGAADLGARVVLPSLQKLGVGALDLMVISHAHADHAGGA
TAVARALAVGRVVGGESAGLPAFLDTQPCLSGEQWEWDGVSFELWQWPGATSSNPKSCVLRVHAQGEGLLLTGDIDQAAE
KAFLTSPLAVQTDWLQAPHHGSRSSSSWRFLQRLAPRSVLISRGRGNAFGHPHPQVMERYQALGSRVYDSAEQGAVRLQL
GTFQPPDVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=729674 N4P55_RS16865 WP_262665130.1 3715761..3717986(-) (comA) [Pseudomonas fluorescens strain Ant01]
ATGAGAACAGGCATGTTCGCACTCGGGCTTGGATTACTTGCGCTGCGATTTCTACCGGCACTGCCGCCGACTGCATGGCT
GCTGGCCATGTTGGTGCTTGCGTTGATGCTGTTGCCGTTTCGCACCTACCCGTTGGCGTTCTTCCTGCTGGGCTTGAGTT
GGGCCTGCATCAGCGCGCAATGGGCGTTGAATGATCGCCTCAAGCCTGCGCTGGACGGGCAGACGCGCTGGGTAGAGGGC
CGTGTGATTGGGTTGCCACAGCAAACGAGCAGCGGCGTACGCTTCGAATTGGCCGACGGACGGTCGCGTAACGCTCGGTT
GCCCAAGCGCATCCGGGTGTCCTGGCAGGGTGGCCCGCCGGTAAACAGCGGCGAGCGCTGGCGGCTGGCGCTCACGTTGA
AGCGGCCCTCGGGGCTGCTTAACTTTCATGGCTTTGACTATGAGGCCTGGTTGCTGGCCCAGCGTATTGGTGCCACCGGC
TCGGTGAAAGATGGCCAGCGCCTGGCGCCGGCCCGCAATGCCTGGCGCGACAGCGTCCGGCAGCGCTTGAAAACAGTCGA
TGCTCAAGGTCGCGAGGCGGGCTTGGCGGCGTTGGTGCTGGGCGATGGCTCGGGGCTGGCGACCGAGGATTGGCGGGTGT
TGCAAGACACCGGAACCGTGCATCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTGGCGGGTTTGATCTACGGCCTG
GTGGCCGGTCTGGCACGCTACGGTTGCTGGCCCCGAGCCTTGCCGTGGCTGCCGTGGGCGTGCGGCCTGGGGTTTGCCGC
CGCGCTCGGTTATGGCCTGCTGGCGGGGTTCGGTGTACCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTATTGCTGT
GGCGTCTGCGTTTTCGGCATTTAGGCGTCTGGTGGCCGTTATTGCTCGCCCTCGATGGCGTGCTGGTGCTCGAGCCTTTG
GCCAGTTTGCAGCCGGGGTTCTGGTTGTCGTTTGCAGCCGTGGCGGTGCTGGTTCTTGCGTTCAGCGGGCGCTTGGGCCC
GTGGCGCATCTGGCAGGCCTGGACTCGCCCCCAATGGTTGATAGCCATCGGTTTGTTTCCGGTATTGCTGGTGCTGGGTT
TGCCCATCAGCCTCAGTGCGCCGGTTGCCAATCTCTTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCATTGGCACTG
CTGGGGACCTTGCTTCTGGCGGTGCCGTTAGTGGGAGAGGGCTTATTGTGGTTGGCCGGTGGAGCGCTTGATGGCCTTTT
CAGGGGTTTGACGCTTTTAGCGGGGCTGCGCTCGGCCTGGGTGCCTGCCGAGGTGCCTGTGGGGTATTGGTTATTAAGCG
CTGTGGGCGCGGTGTTATTGCTCTTGCCCAAAGGCGTACCGTTTCGGCTGCTGGGCTGGCCGTTGCTGATGCTGGCAATC
TTTCCGCCCCGGGCGCTGGTGCCACATGGGCAGGTGGAGGTGCTGCAACTGGATGTCGGCCAGGGGCAAGCGGTGATCCT
GCGCACGCGCAATCACGCAATGCTCTACGACGCAGGGCCGCGCTCGGGGGCGGCGGATCTCGGTGCGCGGGTGGTCTTGC
CTTCGCTGCAAAAGCTCGGGGTAGGGGCGCTGGACCTGATGGTGATCAGTCACGCCCACGCTGACCATGCCGGCGGTGCA
ACCGCTGTCGCCCGTGCGCTTGCGGTCGGGCGGGTCGTCGGCGGAGAGTCCGCAGGGCTGCCGGCATTTCTCGATACGCA
GCCTTGCCTCAGTGGTGAGCAATGGGAGTGGGATGGCGTGTCGTTTGAACTGTGGCAATGGCCTGGCGCCACGAGCAGCA
ATCCGAAATCCTGCGTATTGCGTGTACACGCCCAGGGCGAAGGCCTGTTGCTGACGGGGGATATCGATCAAGCGGCTGAA
AAGGCCTTCCTCACTTCGCCATTGGCGGTGCAGACGGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGCTCCTCATC
CTGGCGGTTTCTGCAACGGCTTGCGCCCAGGTCAGTGCTGATTTCACGCGGGCGTGGCAACGCATTTGGTCATCCCCACC
CACAGGTAATGGAGCGTTATCAAGCGTTGGGCAGCCGAGTCTACGACAGCGCGGAACAAGGAGCCGTACGTCTGCAACTG
GGTACCTTCCAACCACCGGATGTTGCTCGTAGTCAACGCCGATTCTGGCGCGAGGCATTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-666)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.031

0.587
  comA Ralstonia pseudosolanacearum GMI1000

34.465

100

0.37