Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N4P55_RS16860 Genome accession   NZ_CP104408
Coordinates   3715016..3715651 (-) Length   211 a.a.
NCBI ID   WP_064452867.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain Ant01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3710016..3720651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P55_RS16825 (N4P55_16840) - 3710397..3711068 (+) 672 WP_064452861.1 Bax inhibitor-1/YccA family protein -
  N4P55_RS16830 (N4P55_16845) murB 3711131..3712150 (-) 1020 WP_262665126.1 UDP-N-acetylmuramate dehydrogenase -
  N4P55_RS16835 (N4P55_16850) - 3712147..3712611 (-) 465 WP_262665127.1 low molecular weight protein-tyrosine-phosphatase -
  N4P55_RS16840 (N4P55_16855) kdsB 3712611..3713375 (-) 765 WP_064452864.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N4P55_RS16845 (N4P55_16860) - 3713372..3713557 (-) 186 WP_003174668.1 Trm112 family protein -
  N4P55_RS16850 (N4P55_16865) lpxK 3713581..3714591 (-) 1011 WP_262665128.1 tetraacyldisaccharide 4'-kinase -
  N4P55_RS16855 (N4P55_16870) - 3714591..3715019 (-) 429 WP_262665129.1 ExbD/TolR family protein -
  N4P55_RS16860 (N4P55_16875) exbB 3715016..3715651 (-) 636 WP_064452867.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N4P55_RS16865 (N4P55_16880) comA 3715761..3717986 (-) 2226 WP_262665130.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N4P55_RS16870 (N4P55_16885) - 3718122..3718643 (+) 522 WP_053256801.1 DUF2062 domain-containing protein -
  N4P55_RS16875 (N4P55_16890) - 3718640..3719998 (-) 1359 WP_262668031.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23025.18 Da        Isoelectric Point: 6.8771

>NTDB_id=729673 N4P55_RS16860 WP_064452867.1 3715016..3715651(-) (exbB) [Pseudomonas fluorescens strain Ant01]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=729673 N4P55_RS16860 WP_064452867.1 3715016..3715651(-) (exbB) [Pseudomonas fluorescens strain Ant01]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATTATCATGAGCTCCATCGCCGCACTTGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGAATAACGCCTGAGCATCTGTTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGTTGGATAAAGAAAAGCTCAAGGAGTTACGGGCCAACTCGCCTTTAGGTGAAATCCTTGCGGCCGGCCTCGCCAAC
TCCAAGCATGGTCGAGAGATCATGAAAGAGTGCATCGAGGAGGCCGCTGCCCGGGTCATCCATGAAATGGAGCGCTATAT
CAATGCGCTTGGCACCATTGCGGCCATGGCACCGTTGCTCGGCCTGTTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCACTAACGCCGCCGTGCTGGCGGGCGGTATCTCCAAGGCCTTGATTACCACGGCT
GCGGGCCTGATGGTCGGCATCCCTTCGGTATTTTTCCACCGTTTCCTGCAACGTCGCATCGATGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCCATTAAGCTGGTCGAAGTGGTGCAGGGCGATCGTGATGTCGATTTCGTCGAGGGCCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834