Detailed information NTG0729667

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N4P55_RS04215
• Genome accession: NZ_CP104408
• Coordinates: 976672..977538 (-)
• Length: 288 a.a.
• NCBI ID: WP_316963683.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain Ant01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 971672..982538

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4P55_RS04180 (N4P55_04190)	-	972445..973743 (-)	1299	WP_064450647.1	NAD(P)/FAD-dependent oxidoreductase	-
N4P55_RS04185 (N4P55_04195)	-	973804..973977 (-)	174	WP_064450648.1	DUF3094 family protein	-
N4P55_RS04190 (N4P55_04200)	-	974068..974697 (-)	630	WP_053254334.1	DUF1780 domain-containing protein	-
N4P55_RS04195 (N4P55_04205)	-	974889..975578 (+)	690	WP_064450649.1	energy-coupling factor ABC transporter permease	-
N4P55_RS04200 (N4P55_04210)	-	975643..975858 (+)	216	WP_064450650.1	hypothetical protein	-
N4P55_RS04205 (N4P55_04215)	yacG	975855..976055 (-)	201	WP_064450651.1	DNA gyrase inhibitor YacG	-
N4P55_RS04210 (N4P55_04220)	coaE	976052..976675 (-)	624	WP_064450652.1	dephospho-CoA kinase	-
N4P55_RS04215 (N4P55_04225)	pilD	976672..977538 (-)	867	WP_316963683.1	A24 family peptidase	Machinery gene
N4P55_RS04220 (N4P55_04230)	pilC	977535..978743 (-)	1209	WP_262667007.1	type II secretion system F family protein	Machinery gene
N4P55_RS04225 (N4P55_04235)	-	978946..979359 (+)	414	WP_316963854.1	pilin	-
N4P55_RS04235 (N4P55_04245)	-	979651..979956 (+)	306	WP_221293915.1	DUF6388 family protein	-
N4P55_RS04240 (N4P55_04250)	nadC	980017..980865 (-)	849	WP_064450657.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31891.99 Da
• Isoelectric Point: 7.2576

>NTDB_id=729667 N4P55_RS04215 WP_316963683.1 976672..977538(-) (pilD) [Pseudomonas fluorescens strain Ant01]
MSLLPSEQSWVFIGMALALGLIVGSFINVLVWRLPKMLEREWRAQAQEVLGLPADRANPTYNLIHPNSCCPHCDQPIRAW
ENIPLLSYLILSGRCAHCREPISSRYPITELACALGSAMVAWHFGFGWQAGAVMVLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLILNSFDVLTTLPNALWGAVIGYMSLWTVFWLFKLITGKDGMGYGDFKLLALLGAWGGWQILPMTLLISSLLGVL
AGLILMRLRRSQASMPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=729667 N4P55_RS04215 WP_316963683.1 976672..977538(-) (pilD) [Pseudomonas fluorescens strain Ant01]
TTGAGCCTGCTGCCCAGCGAACAATCATGGGTCTTTATCGGGATGGCGCTCGCTCTGGGCCTGATCGTCGGCAGCTTCAT
CAACGTGCTGGTGTGGCGTCTGCCAAAGATGCTCGAGCGCGAATGGCGTGCCCAAGCCCAGGAAGTGCTGGGCTTGCCTG
CCGATCGCGCGAACCCCACTTACAACCTGATACACCCCAACTCCTGCTGCCCGCATTGCGACCAGCCGATTCGTGCCTGG
GAAAATATCCCGCTGCTCAGCTACCTGATACTCAGTGGCCGTTGCGCCCATTGTCGTGAACCTATCAGTAGCCGCTACCC
CATCACCGAACTGGCCTGCGCGCTGGGCTCAGCTATGGTTGCCTGGCATTTTGGTTTCGGCTGGCAAGCTGGCGCGGTGA
TGGTGTTGAGCTGGGGGTTGCTGGCCATGAGCCTGATCGACGTGGATCATCAACTGTTGCCGGACGTTCTGGTGTTGCCG
CTGCTATGGCTCGGGCTGATCCTCAATAGCTTCGACGTGTTGACGACGCTGCCCAATGCGCTGTGGGGCGCAGTCATAGG
CTATATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCTATGGCGACTTCAAGT
TATTGGCCCTGCTCGGTGCCTGGGGTGGTTGGCAGATTCTGCCGATGACGCTACTGATCTCATCGCTGCTAGGCGTGCTC
GCCGGCTTGATCCTGATGCGCTTGCGCAGGTCCCAGGCGTCGATGCCGATGCCGTTTGGCCCGTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.33	96.875	0.507
pilD	Acinetobacter baumannii D1279779	49.455	95.486	0.472
pilD	Acinetobacter nosocomialis M2	49.27	95.139	0.469
pilD	Vibrio campbellii strain DS40M4	48.214	97.222	0.469
pilD	Neisseria gonorrhoeae MS11	47.674	89.583	0.427