Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   P3U31_RS08105 Genome accession   NZ_CP120036
Coordinates   1677416..1678018 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain Dog138     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1672416..1683018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U31_RS08085 (P3U31_08085) yajC 1673912..1674172 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  P3U31_RS08090 (P3U31_08090) tgt 1674191..1675330 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  P3U31_RS08095 (P3U31_08095) queA 1675353..1676378 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  P3U31_RS08100 (P3U31_08100) ruvB 1676380..1677384 (-) 1005 WP_001005769.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  P3U31_RS08105 (P3U31_08105) ruvA 1677416..1678018 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  P3U31_RS08110 (P3U31_08110) - 1678032..1678487 (-) 456 WP_000368902.1 ACT domain-containing protein -
  P3U31_RS08115 (P3U31_08115) obgE 1678500..1679792 (-) 1293 WP_000496100.1 GTPase ObgE -
  P3U31_RS08120 (P3U31_08120) rpmA 1680673..1680957 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  P3U31_RS08125 (P3U31_08125) - 1680969..1681289 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  P3U31_RS08130 (P3U31_08130) rplU 1681295..1681603 (-) 309 WP_000457384.1 50S ribosomal protein L21 -
  P3U31_RS08135 (P3U31_08135) mreD 1681839..1682369 (-) 531 WP_001259923.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=729192 P3U31_RS08105 WP_000271547.1 1677416..1678018(-) (ruvA) [Staphylococcus aureus strain Dog138]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=729192 P3U31_RS08105 WP_000271547.1 1677416..1678018(-) (ruvA) [Staphylococcus aureus strain Dog138]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425