Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   N4T40_RS09355 Genome accession   NZ_CP104335
Coordinates   1877634..1878044 (+) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain 2021CK-01408     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1872634..1883044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T40_RS09340 (N4T40_09340) - 1873623..1875929 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  N4T40_RS09345 (N4T40_09345) - 1875974..1876747 (-) 774 WP_000682843.1 SDR family oxidoreductase -
  N4T40_RS09350 (N4T40_09350) mazG 1876859..1877665 (+) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  N4T40_RS09355 (N4T40_09355) comEA 1877634..1878044 (+) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  N4T40_RS09360 (N4T40_09360) pcnB 1878169..1879632 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  N4T40_RS09365 (N4T40_09365) folK 1879629..1880111 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  N4T40_RS09370 (N4T40_09370) panB 1880157..1880966 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  N4T40_RS09375 (N4T40_09375) panC 1880970..1881818 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  N4T40_RS09380 (N4T40_09380) rapZ 1881841..1882692 (+) 852 WP_000821671.1 RNase adapter RapZ -
  N4T40_RS09385 (N4T40_09385) - 1882689..1882958 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=728746 N4T40_RS09355 WP_002041921.1 1877634..1878044(+) (comEA) [Acinetobacter baumannii strain 2021CK-01408]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=728746 N4T40_RS09355 WP_002041921.1 1877634..1878044(+) (comEA) [Acinetobacter baumannii strain 2021CK-01408]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382