Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   N2K92_RS18775 Genome accession   NZ_CP104297
Coordinates   3960002..3960412 (+) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain ZHOU     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3955002..3965412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K92_RS18760 (N2K92_18775) - 3955991..3958297 (+) 2307 WP_071210928.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  N2K92_RS18765 (N2K92_18780) - 3958342..3959115 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  N2K92_RS18770 (N2K92_18785) mazG 3959227..3960033 (+) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  N2K92_RS18775 (N2K92_18790) comEA 3960002..3960412 (+) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  N2K92_RS18780 (N2K92_18795) pcnB 3960537..3962000 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  N2K92_RS18785 (N2K92_18800) folK 3961997..3962479 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  N2K92_RS18790 (N2K92_18805) panB 3962525..3963334 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  N2K92_RS18795 (N2K92_18810) panC 3963338..3964186 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  N2K92_RS18800 (N2K92_18815) rapZ 3964209..3965060 (+) 852 WP_000821671.1 RNase adapter RapZ -
  N2K92_RS18805 (N2K92_18820) - 3965057..3965326 (+) 270 WP_019458135.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=728457 N2K92_RS18775 WP_002041921.1 3960002..3960412(+) (comEA) [Acinetobacter baumannii strain ZHOU]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=728457 N2K92_RS18775 WP_002041921.1 3960002..3960412(+) (comEA) [Acinetobacter baumannii strain ZHOU]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCACAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382