Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   N4Q44_RS16100 Genome accession   NZ_CP104295
Coordinates   3396206..3396616 (-) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain DETAB-C9     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3391206..3401616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q44_RS16070 (N4Q44_16080) - 3391292..3391561 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  N4Q44_RS16075 (N4Q44_16085) rapZ 3391558..3392409 (-) 852 WP_000821671.1 RNase adapter RapZ -
  N4Q44_RS16080 (N4Q44_16090) panC 3392432..3393280 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  N4Q44_RS16085 (N4Q44_16095) panB 3393284..3394093 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  N4Q44_RS16090 (N4Q44_16100) folK 3394139..3394621 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  N4Q44_RS16095 (N4Q44_16105) pcnB 3394618..3396081 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  N4Q44_RS16100 (N4Q44_16110) comEA 3396206..3396616 (-) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  N4Q44_RS16105 (N4Q44_16115) mazG 3396585..3397391 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  N4Q44_RS16110 (N4Q44_16120) - 3397503..3398276 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  N4Q44_RS16115 (N4Q44_16125) - 3398321..3400627 (-) 2307 WP_071210928.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=728392 N4Q44_RS16100 WP_002041921.1 3396206..3396616(-) (comEA) [Acinetobacter baumannii strain DETAB-C9]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=728392 N4Q44_RS16100 WP_002041921.1 3396206..3396616(-) (comEA) [Acinetobacter baumannii strain DETAB-C9]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCACAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382